Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17469 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1747 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g17470 | PHOSPHATASE AND ACTIN REGULATOR PHACTR |
Clavulariidae_g17471 | METALLO PHOSPHOESTERASE RELATED |
Clavulariidae_g17472 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
Clavulariidae_g17473 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g17474 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g17475 | KELCH PROTEIN |
Clavulariidae_g17476 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17477 | CHROMOSOME 8 OPEN READING FRAME 48 |
Clavulariidae_g17478 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E |
Clavulariidae_g17479 | NGD5/OSM-6/IFT52 |
Clavulariidae_g1748 | |
Clavulariidae_g17480 | L-THREONINE 3-DEHYDROGENASE |
Clavulariidae_g17481 | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER |
Clavulariidae_g17482 | UDP-GLUCOSE 4-EPIMERASE |
Clavulariidae_g17483 | |
Clavulariidae_g17484 | REGULATORY PROTEIN ZESTE |
Clavulariidae_g17485 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g17486 | NIBAN FAMILY MEMBER |
Clavulariidae_g17487 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
Clavulariidae_g17488 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g17489 | |
Clavulariidae_g1749 | |
Clavulariidae_g17490 | UBIQUITIN-ACTIVATING ENZYME E1 |
Clavulariidae_g17491 | GEMININ |
Clavulariidae_g17492 | MYELIN TRANSCRIPTION FACTOR 1-RELATED |
Clavulariidae_g17493 | FI20236P1 |
Clavulariidae_g17494 | |
Clavulariidae_g17495 | ACETYL-COENZYME A SYNTHETASE |
Clavulariidae_g17496 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Clavulariidae_g17497 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
Clavulariidae_g17498 | |
Clavulariidae_g17499 | D-XYLOSE-PROTON SYMPORTER-LIKE 2 |
Clavulariidae_g175 | BETA-GALACTOSIDASE RELATED |
Clavulariidae_g1750 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17500 | |
Clavulariidae_g17501 | |
Clavulariidae_g17502 | D-XYLOSE-PROTON SYMPORTER-LIKE 2 |
Clavulariidae_g17503 | |
Clavulariidae_g17504 | |
Clavulariidae_g17505 | D-XYLOSE-PROTON SYMPORTER-LIKE 2 |
Clavulariidae_g17506 | UNCHARACTERIZED |
Clavulariidae_g17507 | FIBRILLIN-RELATED |
Clavulariidae_g17508 | |
Clavulariidae_g17509 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1751 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17510 | |
Clavulariidae_g17511 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17512 | NETRIN/LAMININ-RELATED |