About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17469ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1747DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g17470PHOSPHATASE AND ACTIN REGULATOR PHACTR
Clavulariidae_g17471METALLO PHOSPHOESTERASE RELATED
Clavulariidae_g17472PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
Clavulariidae_g17473TYROSINE-PROTEIN KINASE
Clavulariidae_g17474TYROSINE-PROTEIN KINASE
Clavulariidae_g17475KELCH PROTEIN
Clavulariidae_g17476REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17477CHROMOSOME 8 OPEN READING FRAME 48
Clavulariidae_g17478EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E
Clavulariidae_g17479NGD5/OSM-6/IFT52
Clavulariidae_g1748
Clavulariidae_g17480L-THREONINE 3-DEHYDROGENASE
Clavulariidae_g17481MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
Clavulariidae_g17482UDP-GLUCOSE 4-EPIMERASE
Clavulariidae_g17483
Clavulariidae_g17484REGULATORY PROTEIN ZESTE
Clavulariidae_g17485TYROSINE-PROTEIN KINASE
Clavulariidae_g17486NIBAN FAMILY MEMBER
Clavulariidae_g17487CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Clavulariidae_g17488SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g17489
Clavulariidae_g1749
Clavulariidae_g17490UBIQUITIN-ACTIVATING ENZYME E1
Clavulariidae_g17491GEMININ
Clavulariidae_g17492MYELIN TRANSCRIPTION FACTOR 1-RELATED
Clavulariidae_g17493FI20236P1
Clavulariidae_g17494
Clavulariidae_g17495ACETYL-COENZYME A SYNTHETASE
Clavulariidae_g17496E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Clavulariidae_g17497GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER
Clavulariidae_g17498
Clavulariidae_g17499D-XYLOSE-PROTON SYMPORTER-LIKE 2
Clavulariidae_g175BETA-GALACTOSIDASE RELATED
Clavulariidae_g1750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17500
Clavulariidae_g17501
Clavulariidae_g17502D-XYLOSE-PROTON SYMPORTER-LIKE 2
Clavulariidae_g17503
Clavulariidae_g17504
Clavulariidae_g17505D-XYLOSE-PROTON SYMPORTER-LIKE 2
Clavulariidae_g17506UNCHARACTERIZED
Clavulariidae_g17507FIBRILLIN-RELATED
Clavulariidae_g17508
Clavulariidae_g17509TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1751PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17510
Clavulariidae_g17511REVERSE TRANSCRIPTASES
Clavulariidae_g17512NETRIN/LAMININ-RELATED
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