About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17559POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g1756LEUCINE ZIPPER PROTEIN 4-RELATED
Clavulariidae_g17560POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17561POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17562MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
Clavulariidae_g17563SULFOTRANSFERASE SULT
Clavulariidae_g17564RNA PROCESSING PROTEIN LD23810P
Clavulariidae_g17565RNA PROCESSING PROTEIN LD23810P
Clavulariidae_g17566POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17567POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17568POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17569POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g1757REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17570POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17571POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17572POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17573POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17574POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17575POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17576ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B
Clavulariidae_g17577
Clavulariidae_g17578
Clavulariidae_g17579
Clavulariidae_g1758RETROTRANSPOSON
Clavulariidae_g17580
Clavulariidae_g17581HRAS-LIKE SUPPRESSOR - RELATED
Clavulariidae_g17582SOLUTE CARRIER FAMILY 13 MEMBER
Clavulariidae_g17583DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g17584DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g17585PROTEIN PITCHFORK
Clavulariidae_g17586TRANSMEMBRANE PROTEIN 180
Clavulariidae_g17587TRANSMEMBRANE PROTEIN 180
Clavulariidae_g17588SOLUTE CARRIER FAMILY 13 MEMBER
Clavulariidae_g17589
Clavulariidae_g1759DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17590INOSITOL 5-PHOSPHATASE
Clavulariidae_g17591COILED-COIL DOMAIN-CONTAINING PROTEIN 181
Clavulariidae_g17592PROTEIN LIN1
Clavulariidae_g17593ZINC METALLOPROTEINASE-RELATED
Clavulariidae_g17594MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN
Clavulariidae_g17595MICROTUBULE-ASSOCIATED PROTEIN
Clavulariidae_g17596ALDO/KETO REDUCTASE
Clavulariidae_g17597UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g17598YCCV-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17599DED DOMAIN-CONTAINING PROTEIN
Clavulariidae_g176
Clavulariidae_g1760
Clavulariidae_g17600
Clavulariidae_g17601
Clavulariidae_g17602
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