About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17694NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52
Clavulariidae_g17695SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA
Clavulariidae_g17696ATP-DEPENDENT CLP PROTEASE
Clavulariidae_g17697
Clavulariidae_g17698
Clavulariidae_g17699
Clavulariidae_g177EAP30 SUBUNIT OF ELL COMPLEX
Clavulariidae_g1770
Clavulariidae_g17700CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17701ACYL-COA SYNTHETASE
Clavulariidae_g17702CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17703METHYLTRANSFERASE
Clavulariidae_g17704
Clavulariidae_g17705TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g17706UNCHARACTERIZED
Clavulariidae_g17707RNA HELICASE
Clavulariidae_g17708REVERSE TRANSCRIPTASES
Clavulariidae_g17709DNA POLYMERASE
Clavulariidae_g1771REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17710
Clavulariidae_g17711
Clavulariidae_g17712COLLAGEN ALPHA
Clavulariidae_g17713
Clavulariidae_g17714
Clavulariidae_g17715GEM-ASSOCIATED PROTEIN 5
Clavulariidae_g17716ENDONUCLEASE-RELATED
Clavulariidae_g17717STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g17718POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Clavulariidae_g17719POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
Clavulariidae_g1772BRYOPORIN
Clavulariidae_g17720POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
Clavulariidae_g17721TBC1 DOMAIN FAMILY MEMBER 19
Clavulariidae_g17722ATP7, ISOFORM B
Clavulariidae_g17723PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR
Clavulariidae_g17724COLLAGEN ALPHA
Clavulariidae_g17725
Clavulariidae_g17726
Clavulariidae_g17727INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g17728
Clavulariidae_g17729DNA POLYMERASE
Clavulariidae_g1773HEH2P
Clavulariidae_g17730REVERSE TRANSCRIPTASES
Clavulariidae_g17731SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g17732REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17733ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17734CYTOCHROME P450 FAMILY 4
Clavulariidae_g17735
Clavulariidae_g17736CYTOCHROME P450 FAMILY 4
Clavulariidae_g17737ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17738PROTEIN CBG26694
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