Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17694 | NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 |
Clavulariidae_g17695 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
Clavulariidae_g17696 | ATP-DEPENDENT CLP PROTEASE |
Clavulariidae_g17697 | |
Clavulariidae_g17698 | |
Clavulariidae_g17699 | |
Clavulariidae_g177 | EAP30 SUBUNIT OF ELL COMPLEX |
Clavulariidae_g1770 | |
Clavulariidae_g17700 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g17701 | ACYL-COA SYNTHETASE |
Clavulariidae_g17702 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g17703 | METHYLTRANSFERASE |
Clavulariidae_g17704 | |
Clavulariidae_g17705 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
Clavulariidae_g17706 | UNCHARACTERIZED |
Clavulariidae_g17707 | RNA HELICASE |
Clavulariidae_g17708 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17709 | DNA POLYMERASE |
Clavulariidae_g1771 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17710 | |
Clavulariidae_g17711 | |
Clavulariidae_g17712 | COLLAGEN ALPHA |
Clavulariidae_g17713 | |
Clavulariidae_g17714 | |
Clavulariidae_g17715 | GEM-ASSOCIATED PROTEIN 5 |
Clavulariidae_g17716 | ENDONUCLEASE-RELATED |
Clavulariidae_g17717 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Clavulariidae_g17718 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
Clavulariidae_g17719 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
Clavulariidae_g1772 | BRYOPORIN |
Clavulariidae_g17720 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
Clavulariidae_g17721 | TBC1 DOMAIN FAMILY MEMBER 19 |
Clavulariidae_g17722 | ATP7, ISOFORM B |
Clavulariidae_g17723 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
Clavulariidae_g17724 | COLLAGEN ALPHA |
Clavulariidae_g17725 | |
Clavulariidae_g17726 | |
Clavulariidae_g17727 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g17728 | |
Clavulariidae_g17729 | DNA POLYMERASE |
Clavulariidae_g1773 | HEH2P |
Clavulariidae_g17730 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17731 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g17732 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17733 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17734 | CYTOCHROME P450 FAMILY 4 |
Clavulariidae_g17735 | |
Clavulariidae_g17736 | CYTOCHROME P450 FAMILY 4 |
Clavulariidae_g17737 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17738 | PROTEIN CBG26694 |