Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17739 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g1774 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g17740 | OS02G0260700 PROTEIN |
Clavulariidae_g17741 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
Clavulariidae_g17742 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g17743 | |
Clavulariidae_g17744 | |
Clavulariidae_g17745 | |
Clavulariidae_g17746 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17747 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17748 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g17749 | |
Clavulariidae_g1775 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17750 | |
Clavulariidae_g17751 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
Clavulariidae_g17752 | THYROTROPH EMBRYONIC FACTOR RELATED |
Clavulariidae_g17753 | |
Clavulariidae_g17754 | |
Clavulariidae_g17755 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17756 | TOL-PAL SYSTEM PROTEIN TOLA |
Clavulariidae_g17757 | RETROTRANSPOSON |
Clavulariidae_g17758 | OS02G0260700 PROTEIN |
Clavulariidae_g17759 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1776 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17760 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g17761 | PROTEIN SIDEKICK |
Clavulariidae_g17762 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17763 | |
Clavulariidae_g17764 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17765 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 |
Clavulariidae_g17766 | BETA-AMYLOID BINDING PROTEIN-RELATED |
Clavulariidae_g17767 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g17768 | SERINE-THREONINE PROTEIN KINASE |
Clavulariidae_g17769 | |
Clavulariidae_g1777 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17770 | |
Clavulariidae_g17771 | |
Clavulariidae_g17772 | |
Clavulariidae_g17773 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g17774 | |
Clavulariidae_g17775 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17776 | METHYLTRANSFERASE |
Clavulariidae_g17777 | TRIHELIX TRANSCRIPTION FACTOR ASIL2 |
Clavulariidae_g17778 | UNCHARACTERIZED |
Clavulariidae_g17779 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g1778 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17780 | PROTEIN CBG23764 |
Clavulariidae_g17781 | COLLAGEN ALPHA |
Clavulariidae_g17782 | |
Clavulariidae_g17783 | PROTEIN, PUTATIVE-RELATED |