About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17739TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g1774THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g17740OS02G0260700 PROTEIN
Clavulariidae_g17741CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
Clavulariidae_g17742DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g17743
Clavulariidae_g17744
Clavulariidae_g17745
Clavulariidae_g17746RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17747REVERSE TRANSCRIPTASES
Clavulariidae_g17748VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g17749
Clavulariidae_g1775REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17750
Clavulariidae_g17751BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED
Clavulariidae_g17752THYROTROPH EMBRYONIC FACTOR RELATED
Clavulariidae_g17753
Clavulariidae_g17754
Clavulariidae_g17755ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17756TOL-PAL SYSTEM PROTEIN TOLA
Clavulariidae_g17757RETROTRANSPOSON
Clavulariidae_g17758OS02G0260700 PROTEIN
Clavulariidae_g17759TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1776ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17760FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g17761PROTEIN SIDEKICK
Clavulariidae_g17762ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17763
Clavulariidae_g17764REVERSE TRANSCRIPTASES
Clavulariidae_g17765CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8
Clavulariidae_g17766BETA-AMYLOID BINDING PROTEIN-RELATED
Clavulariidae_g17767SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g17768SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g17769
Clavulariidae_g1777REVERSE TRANSCRIPTASES
Clavulariidae_g17770
Clavulariidae_g17771
Clavulariidae_g17772
Clavulariidae_g17773TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g17774
Clavulariidae_g17775REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17776METHYLTRANSFERASE
Clavulariidae_g17777TRIHELIX TRANSCRIPTION FACTOR ASIL2
Clavulariidae_g17778UNCHARACTERIZED
Clavulariidae_g17779CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1778ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17780PROTEIN CBG23764
Clavulariidae_g17781COLLAGEN ALPHA
Clavulariidae_g17782
Clavulariidae_g17783PROTEIN, PUTATIVE-RELATED
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