Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17649 | DOPEY-RELATED |
Clavulariidae_g1765 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g17650 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
Clavulariidae_g17651 | ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 |
Clavulariidae_g17652 | |
Clavulariidae_g17653 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17654 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17655 | LD33804P |
Clavulariidae_g17656 | CULLIN |
Clavulariidae_g17657 | |
Clavulariidae_g17658 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17659 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
Clavulariidae_g1766 | PROTEASE M1 ZINC METALLOPROTEASE |
Clavulariidae_g17660 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g17661 | |
Clavulariidae_g17662 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Clavulariidae_g17663 | |
Clavulariidae_g17664 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17665 | SUCCINATE DEHYDROGENASE |
Clavulariidae_g17666 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Clavulariidae_g17667 | |
Clavulariidae_g17668 | |
Clavulariidae_g17669 | |
Clavulariidae_g1767 | UNCHARACTERIZED |
Clavulariidae_g17670 | |
Clavulariidae_g17671 | |
Clavulariidae_g17672 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Clavulariidae_g17673 | OS02G0260700 PROTEIN |
Clavulariidae_g17674 | |
Clavulariidae_g17675 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
Clavulariidae_g17676 | AMINO ACID TRANSPORTER |
Clavulariidae_g17677 | |
Clavulariidae_g17678 | |
Clavulariidae_g17679 | |
Clavulariidae_g1768 | DYSTROGLYCAN-RELATED |
Clavulariidae_g17680 | PROTEIN CBG26694 |
Clavulariidae_g17681 | |
Clavulariidae_g17682 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17683 | PROTEIN CBG26694 |
Clavulariidae_g17684 | PROTEIN CBG26694 |
Clavulariidae_g17685 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
Clavulariidae_g17686 | TRANSPOSASE-RELATED |
Clavulariidae_g17687 | |
Clavulariidae_g17688 | |
Clavulariidae_g17689 | |
Clavulariidae_g1769 | CRUMBS FAMILY MEMBER |
Clavulariidae_g17690 | THAP DOMAIN PROTEIN |
Clavulariidae_g17691 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g17692 | AMINO ACID TRANSPORTER |
Clavulariidae_g17693 |