About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17649DOPEY-RELATED
Clavulariidae_g176552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g17650GERANYLGERANYL PYROPHOSPHATE SYNTHASE
Clavulariidae_g17651ERYTHROID DIFFERENTIATION-RELATED FACTOR 1
Clavulariidae_g17652
Clavulariidae_g17653RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17654RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17655LD33804P
Clavulariidae_g17656CULLIN
Clavulariidae_g17657
Clavulariidae_g17658RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17659CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
Clavulariidae_g1766PROTEASE M1 ZINC METALLOPROTEASE
Clavulariidae_g17660PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Clavulariidae_g17661
Clavulariidae_g17662PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Clavulariidae_g17663
Clavulariidae_g17664ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17665SUCCINATE DEHYDROGENASE
Clavulariidae_g17666HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g17667
Clavulariidae_g17668
Clavulariidae_g17669
Clavulariidae_g1767UNCHARACTERIZED
Clavulariidae_g17670
Clavulariidae_g17671
Clavulariidae_g17672HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g17673OS02G0260700 PROTEIN
Clavulariidae_g17674
Clavulariidae_g17675HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g17676AMINO ACID TRANSPORTER
Clavulariidae_g17677
Clavulariidae_g17678
Clavulariidae_g17679
Clavulariidae_g1768DYSTROGLYCAN-RELATED
Clavulariidae_g17680PROTEIN CBG26694
Clavulariidae_g17681
Clavulariidae_g17682PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17683PROTEIN CBG26694
Clavulariidae_g17684PROTEIN CBG26694
Clavulariidae_g17685HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g17686TRANSPOSASE-RELATED
Clavulariidae_g17687
Clavulariidae_g17688
Clavulariidae_g17689
Clavulariidae_g1769CRUMBS FAMILY MEMBER
Clavulariidae_g17690THAP DOMAIN PROTEIN
Clavulariidae_g1769152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g17692AMINO ACID TRANSPORTER
Clavulariidae_g17693
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