Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17423 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE |
Clavulariidae_g17424 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Clavulariidae_g17425 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17426 | UNCHARACTERIZED |
Clavulariidae_g17427 | POTE ANKYRIN DOMAIN |
Clavulariidae_g17428 | CYTOSOLIC CARBOXYPEPTIDASE |
Clavulariidae_g17429 | RNA HELICASE |
Clavulariidae_g1743 | |
Clavulariidae_g17430 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
Clavulariidae_g17431 | GLR0591 PROTEIN |
Clavulariidae_g17432 | GLR0591 PROTEIN |
Clavulariidae_g17433 | |
Clavulariidae_g17434 | GLR0591 PROTEIN |
Clavulariidae_g17435 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
Clavulariidae_g17436 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Clavulariidae_g17437 | |
Clavulariidae_g17438 | |
Clavulariidae_g17439 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Clavulariidae_g1744 | REVERSE TRANSCRIPTASE |
Clavulariidae_g17440 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g17441 | FTP DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17442 | FTP DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17443 | ATP-DEPENDENT RNA HELICASE DBP3 |
Clavulariidae_g17444 | IP01015P-RELATED |
Clavulariidae_g17445 | |
Clavulariidae_g17446 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
Clavulariidae_g17447 | SOX TRANSCRIPTION FACTOR |
Clavulariidae_g17448 | HISTONE DEACETYLASE HDAC1-RELATED |
Clavulariidae_g17449 | E3 UBIQUITIN-PROTEIN LIGASE HECTD3 |
Clavulariidae_g1745 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g17450 | |
Clavulariidae_g17451 | PROTEIN PHOSPHATASE 2C |
Clavulariidae_g17452 | |
Clavulariidae_g17453 | LD33804P |
Clavulariidae_g17454 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17455 | PROTEIN CBG26694 |
Clavulariidae_g17456 | |
Clavulariidae_g17457 | |
Clavulariidae_g17458 | |
Clavulariidae_g17459 | |
Clavulariidae_g1746 | |
Clavulariidae_g17460 | |
Clavulariidae_g17461 | NEUROTRANSMITTER GATED ION CHANNEL |
Clavulariidae_g17462 | MITOGEN-ACTIVATED PROTEIN KINASE |
Clavulariidae_g17463 | REGULATOR OF G PROTEIN SIGNALING |
Clavulariidae_g17464 | SYNTAXIN |
Clavulariidae_g17465 | |
Clavulariidae_g17466 | FIBRILLIN-RELATED |
Clavulariidae_g17467 | |
Clavulariidae_g17468 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |