About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17153STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g17154STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g17155STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g17156STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g17157STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g1715860S RIBOSOMAL PROTEIN L11-RELATED
Clavulariidae_g17159
Clavulariidae_g1716HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g17160
Clavulariidae_g17161
Clavulariidae_g17162BAX INHIBITOR-RELATED
Clavulariidae_g17163TRANSCRIPTION INITIATION FACTOR TFIID
Clavulariidae_g17164FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED
Clavulariidae_g17165UNCHARACTERIZED
Clavulariidae_g17166DUAL SPECIFICITY PROTEIN PHOSPHATASE
Clavulariidae_g17167RETROTRANSPOSON
Clavulariidae_g17168ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4
Clavulariidae_g17169
Clavulariidae_g1717
Clavulariidae_g17170CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70
Clavulariidae_g17171DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
Clavulariidae_g17172DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
Clavulariidae_g17173DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
Clavulariidae_g17174FIBRILLIN-RELATED
Clavulariidae_g17175FIBRILLIN-RELATED
Clavulariidae_g17176FIBRILLIN-RELATED
Clavulariidae_g17177
Clavulariidae_g17178COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Clavulariidae_g17179HOMEOBOX PROTEIN SIX
Clavulariidae_g1718
Clavulariidae_g17180TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17181UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g17182UNCHARACTERIZED
Clavulariidae_g17183CYCLIN Y, ISOFORM A
Clavulariidae_g17184TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g17185
Clavulariidae_g17186TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g17187
Clavulariidae_g17188NONSYNDROMIC HEARING IMPAIRMENT PROTEIN
Clavulariidae_g17189EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
Clavulariidae_g1719CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17190IMPORTIN BETA
Clavulariidae_g17191SOLUTE CARRIER FAMILY 35
Clavulariidae_g17192JNK1/MAPK8-ASSOCIATED MEMBRANE PROTEIN
Clavulariidae_g17193HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER
Clavulariidae_g17194EG:EG0003.4 PROTEIN-RELATED
Clavulariidae_g17195SERINE/THREONINE-PROTEIN KINASE SAMKA-RELATED-RELATED
Clavulariidae_g17196ADENYLYL CYCLASE-ASSOCIATED PROTEIN
Clavulariidae_g17197AP COMPLEX SUBUNIT MU
Clavulariidae_g17198RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED
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