Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g16884 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Clavulariidae_g16885 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16886 | FRIZZLED |
| Clavulariidae_g16887 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
| Clavulariidae_g16888 | 2-HYDROXYACYL-COA LYASE |
| Clavulariidae_g16889 | PROTEIN CBG26694 |
| Clavulariidae_g1689 | P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED |
| Clavulariidae_g16890 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g16891 | ENDONUCLEASE-RELATED |
| Clavulariidae_g16892 | SINGLE STRANDED DNA BINDING PROTEIN |
| Clavulariidae_g16893 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 72 |
| Clavulariidae_g16894 | INTELECTIN |
| Clavulariidae_g16895 | CELL DEATH ACTIVATOR CIDE |
| Clavulariidae_g16896 | |
| Clavulariidae_g16897 | SOLUTE CARRIER FAMILY 35 |
| Clavulariidae_g16898 | TRANSMEMBRANE PROTEIN 59-LIKE PROTEIN |
| Clavulariidae_g16899 | NADPH OXIDASE |
| Clavulariidae_g169 | PROTEIN CBG26694 |
| Clavulariidae_g1690 | TRANSLATION ELONGATION FACTOR-RELATED |
| Clavulariidae_g16900 | SPERMATOGENESIS-ASSOCIATED PROTEIN 1 |
| Clavulariidae_g16901 | NUCLEAR FACTOR I |
| Clavulariidae_g16902 | |
| Clavulariidae_g16903 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g16904 | PROTEIN KIAA0494 |
| Clavulariidae_g16905 | EXPRESSED PROTEIN |
| Clavulariidae_g16906 | |
| Clavulariidae_g16907 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g16908 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16909 | MUCOLIPIN |
| Clavulariidae_g1691 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16910 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| Clavulariidae_g16911 | LD33804P |
| Clavulariidae_g16912 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g16913 | |
| Clavulariidae_g16914 | |
| Clavulariidae_g16915 | |
| Clavulariidae_g16916 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Clavulariidae_g16917 | |
| Clavulariidae_g16918 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Clavulariidae_g16919 | SYNAPTOTAGMIN |
| Clavulariidae_g1692 | AGAP001464-PB |
| Clavulariidae_g16920 | REVERSE TRANSCRIPTASE |
| Clavulariidae_g16921 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| Clavulariidae_g16922 | |
| Clavulariidae_g16923 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| Clavulariidae_g16924 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Clavulariidae_g16925 | POL PROTEIN |
| Clavulariidae_g16926 | PROTEIN CBG26694 |
| Clavulariidae_g16927 | |
| Clavulariidae_g16928 | INOSITOL 5-PHOSPHATASE |
