About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17018
Clavulariidae_g17019
Clavulariidae_g1702PROTEIN SGT1 HOMOLOG
Clavulariidae_g17020PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17021
Clavulariidae_g17022EXPRESSED PROTEIN
Clavulariidae_g17023
Clavulariidae_g17024TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g17025
Clavulariidae_g17026
Clavulariidae_g17027PROTEIN CBG23806
Clavulariidae_g17028
Clavulariidae_g17029INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1703HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g17030
Clavulariidae_g17031L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g17032
Clavulariidae_g17033REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17034
Clavulariidae_g17035ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17036CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17037POL PROTEIN
Clavulariidae_g17038-
Clavulariidae_g17039
Clavulariidae_g1704
Clavulariidae_g17040EXPRESSED PROTEIN
Clavulariidae_g17041
Clavulariidae_g17042EXPRESSED PROTEIN
Clavulariidae_g17043THAP DOMAIN PROTEIN
Clavulariidae_g17044ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17045
Clavulariidae_g17046
Clavulariidae_g17047
Clavulariidae_g17048PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17049PROTEIN CBG26694
Clavulariidae_g1705WNT RELATED
Clavulariidae_g17050RETROTRANSPOSON
Clavulariidae_g17051
Clavulariidae_g17052
Clavulariidae_g17053L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g17054PROTEIN CBG26694
Clavulariidae_g17055
Clavulariidae_g17056
Clavulariidae_g17057REVERSE TRANSCRIPTASES
Clavulariidae_g17058PROTEIN, PUTATIVE-RELATED
Clavulariidae_g17059ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1706REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17060CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17061RETROTRANSPOSON
Clavulariidae_g17062PHD-TYPE DOMAIN-CONTAINING PROTEIN
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