About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16974TRANSPOSON
Clavulariidae_g16975SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g16976
Clavulariidae_g16977EXPRESSED PROTEIN
Clavulariidae_g16978
Clavulariidae_g16979ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1698ACYL-COENZYME A THIOESTERASE THEM4
Clavulariidae_g16980RETROTRANSPOSON
Clavulariidae_g16981
Clavulariidae_g16982DNA POLYMERASE
Clavulariidae_g16983OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g16984ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16985
Clavulariidae_g16986
Clavulariidae_g16987SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16988SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16989
Clavulariidae_g1699FORKHEAD BOX PROTEIN
Clavulariidae_g16990PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16991
Clavulariidae_g16992
Clavulariidae_g16993
Clavulariidae_g16994EXPRESSED PROTEIN
Clavulariidae_g16995
Clavulariidae_g16996TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16997HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g16998
Clavulariidae_g16999PROTEIN CBG23806
Clavulariidae_g17PROTEIN DISULFIDE ISOMERASE
Clavulariidae_g170SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Clavulariidae_g1700
Clavulariidae_g17000
Clavulariidae_g17001
Clavulariidae_g17002RETROTRANSPOSON
Clavulariidae_g17003PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17004
Clavulariidae_g17005EXPRESSED PROTEIN
Clavulariidae_g17006
Clavulariidae_g17007
Clavulariidae_g17008
Clavulariidae_g17009
Clavulariidae_g1701SEC3/SYNTAXIN-RELATED
Clavulariidae_g17010REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17011POL PROTEIN
Clavulariidae_g17012ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g17013TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g17014PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17015REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17016
Clavulariidae_g17017CXC DOMAIN-CONTAINING PROTEIN-RELATED
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