About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17108GUANINE NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g17109SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED
Clavulariidae_g1711
Clavulariidae_g17110DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g17111
Clavulariidae_g17112
Clavulariidae_g17113ZINC FINGER AND BTB DOMAIN-CONTAINING
Clavulariidae_g17114
Clavulariidae_g17115CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61
Clavulariidae_g17116VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Clavulariidae_g17117REVERSE TRANSCRIPTASES
Clavulariidae_g17118ALPHA- 1,6 -FUCOSYLTRANSFERASE
Clavulariidae_g17119EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
Clavulariidae_g1712LIPOXYGENASE
Clavulariidae_g17120DNA REPAIR PROTEIN RAD9
Clavulariidae_g17121BECLIN 1
Clavulariidae_g17122FIBRILLIN-RELATED
Clavulariidae_g17123FIBRILLIN-RELATED
Clavulariidae_g17124ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g17125OLIGOPEPTIDE TRANSPORTER-RELATED
Clavulariidae_g17126CELL CYCLE CONTROL PROTEIN CWF25
Clavulariidae_g17127COILED-COIL DOMAIN-CONTAINING PROTEIN 103
Clavulariidae_g17128ANKYRIN REPEAT FAMILY PROTEIN
Clavulariidae_g171295'->3' EXORIBONUCLEASE
Clavulariidae_g1713
Clavulariidae_g17130CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
Clavulariidae_g17131HOMEOBOX PROTEIN NKX
Clavulariidae_g17132ISLET CELL AUTOANTIGEN 1
Clavulariidae_g17133EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Clavulariidae_g17134PARATHYROID HORMONE-RESPONSIVE B1 GENE
Clavulariidae_g17135PROTEIN SIDEKICK
Clavulariidae_g17136VACUOLAR PROTEIN SORTING VPS41
Clavulariidae_g17137D-TYROSYL-TRNA TYR DEACYLASE
Clavulariidae_g17138SOLUTE CARRIER FAMILY 35, MEMBER F5
Clavulariidae_g17139PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
Clavulariidae_g1714
Clavulariidae_g17140ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14
Clavulariidae_g17141AP COMPLEX SUBUNIT MU
Clavulariidae_g17142BETA-1,4-GALACTOSYLTRANSFERASE
Clavulariidae_g17143VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25
Clavulariidae_g17144MYOSIN REGULATORY LIGHT CHAIN 2
Clavulariidae_g17145UBIQUITINATION FACTOR E4
Clavulariidae_g17146UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g17147BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN
Clavulariidae_g17148ACTIN
Clavulariidae_g17149N-ALPHA-ACETYLTRANSFERASE 20
Clavulariidae_g1715TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g17150TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g17151SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54
Clavulariidae_g17152ZINC FINGER PROTEIN 106
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