About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17243CYSTATHIONINE BETA-SYNTHASE
Clavulariidae_g17244PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4
Clavulariidae_g17245PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4
Clavulariidae_g17246
Clavulariidae_g17247WD REPEAT AND HMG-BOX DNA BINDING PROTEIN
Clavulariidae_g17248METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE
Clavulariidae_g17249CAMK FAMILY PROTEIN KINASE
Clavulariidae_g1725ATP-DEPENDENT DNA HELICASE
Clavulariidae_g17250
Clavulariidae_g17251
Clavulariidae_g17252TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6
Clavulariidae_g17253HOMEOBOX PROTEIN SIX
Clavulariidae_g17254SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g17255HOMEOBOX PROTEIN SIX
Clavulariidae_g17256
Clavulariidae_g17257HOMEOBOX PROTEIN SIX
Clavulariidae_g17258HOMEOBOX PROTEIN SIX
Clavulariidae_g17259REGULATOR OF G-PROTEIN SIGNALING 22
Clavulariidae_g1726REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17260NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1
Clavulariidae_g17261TRAFFICKING KINESIN-BINDING PROTEIN
Clavulariidae_g17262PENTRAXIN
Clavulariidae_g17263CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Clavulariidae_g17264COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Clavulariidae_g17265
Clavulariidae_g17266RAD9, HUS1, RAD1-INTERACTING NUCLEAR ORPHAN PROTEIN 1
Clavulariidae_g17267DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED
Clavulariidae_g17268TENSIN
Clavulariidae_g17269TENSIN
Clavulariidae_g1727PROTEIN CBG26694
Clavulariidae_g17270ACROSIN-RELATED
Clavulariidae_g17271HYCCIN RELATED
Clavulariidae_g17272IMPORTIN BETA
Clavulariidae_g17273LEISHMANOLYSIN-LIKE PEPTIDASE
Clavulariidae_g17274
Clavulariidae_g17275RIBOSOMAL PROTEIN S6 KINASE
Clavulariidae_g17276THYROTROPH EMBRYONIC FACTOR RELATED
Clavulariidae_g17277HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)
Clavulariidae_g17278CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65
Clavulariidae_g17279GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
Clavulariidae_g1728
Clavulariidae_g17280TRANSAMINASE
Clavulariidae_g17281UNCHARACTERIZED
Clavulariidae_g17282NUCLEAR PORE COMPLEX PROTEIN NUP160
Clavulariidae_g17283
Clavulariidae_g17284MOLTING PROTEIN MLT-4
Clavulariidae_g17285WD-40 REPEAT PROTEIN
Clavulariidae_g17286PROTEIN MAX MYC-ASSOCIATED FACTOR X
Clavulariidae_g17287BTG3-ASSOCIATED NUCLEAR PROTEIN BANP
Clavulariidae_g17288EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
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