About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16703ATP-DEPENDENT RNA AND DNA HELICASE
Clavulariidae_g16704LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42
Clavulariidae_g16705TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
Clavulariidae_g16706RFX TRANSCRIPTION FACTOR FAMILY
Clavulariidae_g16707SH2 CONTAINING ADAPTOR PRAM-1 RELATED
Clavulariidae_g16708GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1
Clavulariidae_g16709
Clavulariidae_g1671LD44032P
Clavulariidae_g16710PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Clavulariidae_g16711DISCS LARGE
Clavulariidae_g16712UNCHARACTERIZED
Clavulariidae_g16713FUKUTIN-RELATED
Clavulariidae_g16714
Clavulariidae_g16715ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g16716PERFORIN-LIKE PROTEIN 1
Clavulariidae_g1671726S PROTEASOME REGULATORY SUBUNIT
Clavulariidae_g16718HEPARAN SULFATE SULFOTRANSFERASE
Clavulariidae_g16719REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1672PEPTIDYLPROLYL ISOMERASE
Clavulariidae_g16720
Clavulariidae_g16721
Clavulariidae_g16722EGF-LIKE-DOMAIN, MULTIPLE 7, 8
Clavulariidae_g16723ARGININE OR CREATINE KINASE
Clavulariidae_g16724UNCHARACTERIZED
Clavulariidae_g16725REVERSE TRANSCRIPTASES
Clavulariidae_g16726INTELECTIN
Clavulariidae_g16727INTELECTIN
Clavulariidae_g16728INTELECTIN
Clavulariidae_g16729TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g1673COILED-COIL DOMAIN-CONTAINING PROTEIN 189
Clavulariidae_g16730KINESIN LIGHT CHAIN
Clavulariidae_g16731INTELECTIN
Clavulariidae_g16732
Clavulariidae_g16733
Clavulariidae_g16734SPERMATOGENESIS-ASSOCIATED PROTEIN 6 SPATA6
Clavulariidae_g16735TUBULIN POLYGLUTAMYLASE
Clavulariidae_g16736DEP DOMAIN PROTEIN
Clavulariidae_g16737TYROSINE-PROTEIN KINASE
Clavulariidae_g16738ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
Clavulariidae_g16739DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
Clavulariidae_g1674UNCHARACTERIZED
Clavulariidae_g16740STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g16741KRAB AND ZINC FINGER DOMAIN-CONTAINING
Clavulariidae_g16742SERINE/THREONINE PROTEIN KINASE
Clavulariidae_g16743REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16744AAA-FAMILY ATPASE
Clavulariidae_g16745DISEASE RESISTANCE PROTEIN RP
Clavulariidae_g16746REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16747PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8
Clavulariidae_g16748PROTEIN CBG26694
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