About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16523
Clavulariidae_g16524RETROTRANSPOSON
Clavulariidae_g16525RETROTRANSPOSON
Clavulariidae_g16526
Clavulariidae_g16527COLLAGEN
Clavulariidae_g16528PROTEIN EVA-1
Clavulariidae_g16529
Clavulariidae_g1653ZGC:101016
Clavulariidae_g16530BONUS, ISOFORM C-RELATED
Clavulariidae_g16531BONUS, ISOFORM C-RELATED
Clavulariidae_g16532
Clavulariidae_g16533ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16534BONUS, ISOFORM C-RELATED
Clavulariidae_g16535BONUS, ISOFORM C-RELATED
Clavulariidae_g16536BONUS, ISOFORM C-RELATED
Clavulariidae_g16537FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g16538
Clavulariidae_g16539PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1654SHIELDIN COMPLEX SUBUNIT 2
Clavulariidae_g16540
Clavulariidae_g16541F-BOX ONLY PROTEIN
Clavulariidae_g16542DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16543
Clavulariidae_g16544REVERSE TRANSCRIPTASES
Clavulariidae_g16545ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16546MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g16547UNCHARACTERIZED
Clavulariidae_g16548L-ASPARAGINASE
Clavulariidae_g16549EXPRESSED PROTEIN
Clavulariidae_g1655UBIQUILIN
Clavulariidae_g16550
Clavulariidae_g16551ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
Clavulariidae_g16552REVERSE TRANSCRIPTASES
Clavulariidae_g16553THAP DOMAIN PROTEIN
Clavulariidae_g16554ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16555
Clavulariidae_g16556
Clavulariidae_g16557ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16558SEC10
Clavulariidae_g16559
Clavulariidae_g1656LD33804P
Clavulariidae_g16560
Clavulariidae_g16561DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16562RETROTRANSPOSON
Clavulariidae_g16563RETROTRANSPOSON
Clavulariidae_g16564REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16565ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16566
Clavulariidae_g16567
Clavulariidae_g16568
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