About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16659
Clavulariidae_g1666UNCHARACTERIZED
Clavulariidae_g16660THAP DOMAIN PROTEIN
Clavulariidae_g16661UNCHARACTERIZED
Clavulariidae_g16662
Clavulariidae_g16663REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16664EXPRESSED PROTEIN
Clavulariidae_g16665
Clavulariidae_g16666
Clavulariidae_g16667
Clavulariidae_g16668
Clavulariidae_g16669REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1667
Clavulariidae_g16670
Clavulariidae_g16671ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16672
Clavulariidae_g16673
Clavulariidae_g16674
Clavulariidae_g16675
Clavulariidae_g16676SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g16677SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g16678ZGC:195170
Clavulariidae_g16679
Clavulariidae_g1668PEROXISOMAL BIOGENESIS FACTOR 11
Clavulariidae_g16680APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Clavulariidae_g16681NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g16682
Clavulariidae_g16683PROTEIN CBG10425
Clavulariidae_g16684MRNA-CAPPING ENZYME
Clavulariidae_g16685
Clavulariidae_g16686
Clavulariidae_g16687
Clavulariidae_g16688PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16689
Clavulariidae_g1669ARGINASE/AGMATINASE
Clavulariidae_g16690
Clavulariidae_g16691
Clavulariidae_g16692L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g16693L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g16694REVERSE TRANSCRIPTASE
Clavulariidae_g16695REVERSE TRANSCRIPTASES
Clavulariidae_g16696TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16697
Clavulariidae_g16698RETROTRANSPOSON
Clavulariidae_g16699REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g167
Clavulariidae_g1670ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g16700
Clavulariidae_g16701NUCLEOPROTEIN TPR-RELATED
Clavulariidae_g16702-
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