About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16569TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Clavulariidae_g1657SLL0310 PROTEIN
Clavulariidae_g16570THAP DOMAIN PROTEIN
Clavulariidae_g16571THAP DOMAIN PROTEIN
Clavulariidae_g16572
Clavulariidae_g16573
Clavulariidae_g16574ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16575
Clavulariidae_g16576
Clavulariidae_g16577PROTEIN CBG26694
Clavulariidae_g16578PROTEIN CBG26694
Clavulariidae_g16579TRANSPOSASE
Clavulariidae_g1658SLL0310 PROTEIN
Clavulariidae_g16580
Clavulariidae_g16581
Clavulariidae_g16582GEO11136P1-RELATED
Clavulariidae_g16583
Clavulariidae_g16584PROTEIN CBG26694
Clavulariidae_g16585
Clavulariidae_g16586
Clavulariidae_g16587THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g16588ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16589UNCHARACTERIZED
Clavulariidae_g165952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g16590REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16591REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16592-
Clavulariidae_g16593
Clavulariidae_g16594INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g16595TYROSINE-PROTEIN KINASE
Clavulariidae_g16596ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16597REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16598TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16599ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g166TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1660LEUCINE RICH REPEAT PROTEIN
Clavulariidae_g16600
Clavulariidae_g16601PROTEIN CBG26694
Clavulariidae_g16602ZGC:195170
Clavulariidae_g16603PROTEIN CBG26694
Clavulariidae_g16604REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16605L-ASPARAGINASE
Clavulariidae_g16606REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16607
Clavulariidae_g16608-
Clavulariidae_g16609
Clavulariidae_g1661ALKALINE CERAMIDASE
Clavulariidae_g16610TYROSINE-PROTEIN KINASE
Clavulariidae_g16611
Clavulariidae_g16612
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