Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g16569 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
Clavulariidae_g1657 | SLL0310 PROTEIN |
Clavulariidae_g16570 | THAP DOMAIN PROTEIN |
Clavulariidae_g16571 | THAP DOMAIN PROTEIN |
Clavulariidae_g16572 | |
Clavulariidae_g16573 | |
Clavulariidae_g16574 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g16575 | |
Clavulariidae_g16576 | |
Clavulariidae_g16577 | PROTEIN CBG26694 |
Clavulariidae_g16578 | PROTEIN CBG26694 |
Clavulariidae_g16579 | TRANSPOSASE |
Clavulariidae_g1658 | SLL0310 PROTEIN |
Clavulariidae_g16580 | |
Clavulariidae_g16581 | |
Clavulariidae_g16582 | GEO11136P1-RELATED |
Clavulariidae_g16583 | |
Clavulariidae_g16584 | PROTEIN CBG26694 |
Clavulariidae_g16585 | |
Clavulariidae_g16586 | |
Clavulariidae_g16587 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Clavulariidae_g16588 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g16589 | UNCHARACTERIZED |
Clavulariidae_g1659 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g16590 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16591 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16592 | - |
Clavulariidae_g16593 | |
Clavulariidae_g16594 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g16595 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g16596 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16597 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16598 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16599 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g166 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1660 | LEUCINE RICH REPEAT PROTEIN |
Clavulariidae_g16600 | |
Clavulariidae_g16601 | PROTEIN CBG26694 |
Clavulariidae_g16602 | ZGC:195170 |
Clavulariidae_g16603 | PROTEIN CBG26694 |
Clavulariidae_g16604 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16605 | L-ASPARAGINASE |
Clavulariidae_g16606 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16607 | |
Clavulariidae_g16608 | - |
Clavulariidae_g16609 | |
Clavulariidae_g1661 | ALKALINE CERAMIDASE |
Clavulariidae_g16610 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g16611 | |
Clavulariidae_g16612 |