Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g16389 | UNCHARACTERIZED |
Clavulariidae_g1639 | |
Clavulariidae_g16390 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16391 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16392 | UNNAMED PRODUCT |
Clavulariidae_g16393 | - |
Clavulariidae_g16394 | |
Clavulariidae_g16395 | PHOSPHATIDYLSERINE DECARBOXYLASE |
Clavulariidae_g16396 | SCAFFOLD ATTACHMENT FACTOR B-RELATED |
Clavulariidae_g16397 | ALPHA-PROTEIN KINASE VWKA |
Clavulariidae_g16398 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Clavulariidae_g16399 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Clavulariidae_g164 | |
Clavulariidae_g1640 | SER/THR-PROTEIN KINASE RIO2 |
Clavulariidae_g16400 | |
Clavulariidae_g16401 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g16402 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16403 | RAPSYN-RELATED |
Clavulariidae_g16404 | ATP-BINDING CASSETTE SUB-FAMILY C |
Clavulariidae_g16405 | ATP-BINDING CASSETTE SUB-FAMILY C |
Clavulariidae_g16406 | G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g16407 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g16408 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g16409 | |
Clavulariidae_g1641 | SAND PROTEIN-RELATED |
Clavulariidae_g16410 | |
Clavulariidae_g16411 | |
Clavulariidae_g16412 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Clavulariidae_g16413 | |
Clavulariidae_g16414 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16415 | OSJNBA0013A04.12 PROTEIN |
Clavulariidae_g16416 | |
Clavulariidae_g16417 | HCG1796489 |
Clavulariidae_g16418 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16419 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1642 | FORKHEAD BOX PROTEIN |
Clavulariidae_g16420 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g16421 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g16422 | COLLAGEN ALPHA |
Clavulariidae_g16423 | |
Clavulariidae_g16424 | PROTEIN CBG23764 |
Clavulariidae_g16425 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16426 | |
Clavulariidae_g16427 | |
Clavulariidae_g16428 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16429 | |
Clavulariidae_g1643 | FORKHEAD BOX PROTEIN |
Clavulariidae_g16430 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16431 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16432 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |