Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g16208 | PROTEIN CBG26694 |
| Clavulariidae_g16209 | ZGC:194242 |
| Clavulariidae_g1621 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| Clavulariidae_g16210 | |
| Clavulariidae_g16211 | |
| Clavulariidae_g16212 | RETROTRANSPOSON |
| Clavulariidae_g16213 | SENTRIN/SUMO-SPECIFIC PROTEASE |
| Clavulariidae_g16214 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Clavulariidae_g16215 | |
| Clavulariidae_g16216 | |
| Clavulariidae_g16217 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g16218 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16219 | |
| Clavulariidae_g1622 | EXPRESSED PROTEIN |
| Clavulariidae_g16220 | RETROTRANSPOSON |
| Clavulariidae_g16221 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16222 | DIMETHYLANILINE MONOOXYGENASE |
| Clavulariidae_g16223 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16224 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g16225 | - |
| Clavulariidae_g16226 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16227 | DIMETHYLANILINE MONOOXYGENASE |
| Clavulariidae_g16228 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16229 | PROTEIN CBG26694 |
| Clavulariidae_g1623 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16230 | PROTEIN CBG26694 |
| Clavulariidae_g16231 | PROTEIN CBG26694 |
| Clavulariidae_g16232 | |
| Clavulariidae_g16233 | |
| Clavulariidae_g16234 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Clavulariidae_g16235 | KINESIN LIGHT CHAIN |
| Clavulariidae_g16236 | ZINC FINGER PROTEIN |
| Clavulariidae_g16237 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16238 | |
| Clavulariidae_g16239 | |
| Clavulariidae_g1624 | PROTEIN CBG23806 |
| Clavulariidae_g16240 | RETROTRANSPOSON |
| Clavulariidae_g16241 | PROTEIN B, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g16242 | FLAP ENDONUCLEASE FAMILY MEMBER |
| Clavulariidae_g16243 | ZINC FINGER PROTEIN |
| Clavulariidae_g16244 | PROTEIN B, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g16245 | |
| Clavulariidae_g16246 | |
| Clavulariidae_g16247 | COLLAGEN ALPHA |
| Clavulariidae_g16248 | |
| Clavulariidae_g16249 | PROTEIN CBG23764 |
| Clavulariidae_g1625 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Clavulariidae_g16250 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16251 | RETROTRANSPOSON |
| Clavulariidae_g16252 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
