About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15984BONUS, ISOFORM C-RELATED
Clavulariidae_g15985INTELECTIN
Clavulariidae_g15986TRANSPOSASE
Clavulariidae_g15987
Clavulariidae_g15988
Clavulariidae_g15989
Clavulariidae_g1599
Clavulariidae_g15990PROTEIN CBG23764
Clavulariidae_g15991REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15992COLLAGEN ALPHA
Clavulariidae_g15993
Clavulariidae_g15994
Clavulariidae_g15995
Clavulariidae_g15996PROTEIN CBG23764
Clavulariidae_g15997REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15998PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15999TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
Clavulariidae_g16PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
Clavulariidae_g160C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1600ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g16000ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV
Clavulariidae_g16001CD59 GLYCOPROTEIN
Clavulariidae_g16002
Clavulariidae_g16003PHOSPHATIDYLSERINE DECARBOXYLASE
Clavulariidae_g16004RETROTRANSPOSON
Clavulariidae_g16005TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16006REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16007OVOCHYMASE-RELATED
Clavulariidae_g16008
Clavulariidae_g16009
Clavulariidae_g1601
Clavulariidae_g16010ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16011
Clavulariidae_g16012
Clavulariidae_g16013
Clavulariidae_g16014
Clavulariidae_g16015RETROTRANSPOSON
Clavulariidae_g16016
Clavulariidae_g16017REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16018
Clavulariidae_g16019PHOSPHATIDYLSERINE DECARBOXYLASE
Clavulariidae_g1602
Clavulariidae_g16020PHOSPHATIDYLSERINE DECARBOXYLASE
Clavulariidae_g16021UNCHARACTERIZED
Clavulariidae_g16022PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16023
Clavulariidae_g16024
Clavulariidae_g16025INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g16026REVERSE TRANSCRIPTASES
Clavulariidae_g16027
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