About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16433
Clavulariidae_g16434ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16435
Clavulariidae_g16436
Clavulariidae_g16437
Clavulariidae_g16438REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16439RETROTRANSPOSON
Clavulariidae_g1644FORKHEAD BOX PROTEIN
Clavulariidae_g16440PHOSPHATIDYLSERINE DECARBOXYLASE
Clavulariidae_g16441RETROTRANSPOSON
Clavulariidae_g16442RETROTRANSPOSON
Clavulariidae_g16443REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16444OVOCHYMASE-RELATED
Clavulariidae_g16445
Clavulariidae_g16446CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16447
Clavulariidae_g16448PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16449HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1645G-PROTEIN COUPLED RECEPTOR 89-RELATED
Clavulariidae_g16450CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16451MULTICOPPER OXIDASE-RELATED
Clavulariidae_g16452EXPRESSED PROTEIN
Clavulariidae_g16453
Clavulariidae_g16454
Clavulariidae_g16455MULTICOPPER OXIDASE-RELATED
Clavulariidae_g16456MULTICOPPER OXIDASE-RELATED
Clavulariidae_g16457FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g16458
Clavulariidae_g16459FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g1646CYCLINS
Clavulariidae_g16460TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16461REVERSE TRANSCRIPTASES
Clavulariidae_g16462HCG1796489
Clavulariidae_g16463ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16464
Clavulariidae_g16465DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16466PROTEIN CBG17840
Clavulariidae_g16467
Clavulariidae_g16468ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g16469OSJNBA0013A04.12 PROTEIN
Clavulariidae_g1647PROTEASOME SUBUNIT ALPHA/BETA
Clavulariidae_g16470
Clavulariidae_g16471ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16472
Clavulariidae_g16473PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g16474TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16475EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16476
Clavulariidae_g16477APONTIC
Clavulariidae_g16478NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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