Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g16433 | |
Clavulariidae_g16434 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16435 | |
Clavulariidae_g16436 | |
Clavulariidae_g16437 | |
Clavulariidae_g16438 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16439 | RETROTRANSPOSON |
Clavulariidae_g1644 | FORKHEAD BOX PROTEIN |
Clavulariidae_g16440 | PHOSPHATIDYLSERINE DECARBOXYLASE |
Clavulariidae_g16441 | RETROTRANSPOSON |
Clavulariidae_g16442 | RETROTRANSPOSON |
Clavulariidae_g16443 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16444 | OVOCHYMASE-RELATED |
Clavulariidae_g16445 | |
Clavulariidae_g16446 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16447 | |
Clavulariidae_g16448 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16449 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1645 | G-PROTEIN COUPLED RECEPTOR 89-RELATED |
Clavulariidae_g16450 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16451 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g16452 | EXPRESSED PROTEIN |
Clavulariidae_g16453 | |
Clavulariidae_g16454 | |
Clavulariidae_g16455 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g16456 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g16457 | FLAP ENDONUCLEASE FAMILY MEMBER |
Clavulariidae_g16458 | |
Clavulariidae_g16459 | FLAP ENDONUCLEASE FAMILY MEMBER |
Clavulariidae_g1646 | CYCLINS |
Clavulariidae_g16460 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16461 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16462 | HCG1796489 |
Clavulariidae_g16463 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16464 | |
Clavulariidae_g16465 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g16466 | PROTEIN CBG17840 |
Clavulariidae_g16467 | |
Clavulariidae_g16468 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Clavulariidae_g16469 | OSJNBA0013A04.12 PROTEIN |
Clavulariidae_g1647 | PROTEASOME SUBUNIT ALPHA/BETA |
Clavulariidae_g16470 | |
Clavulariidae_g16471 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16472 | |
Clavulariidae_g16473 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
Clavulariidae_g16474 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16475 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16476 | |
Clavulariidae_g16477 | APONTIC |
Clavulariidae_g16478 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |