About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16794ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16795PATCHED-RELATED
Clavulariidae_g16796SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
Clavulariidae_g16797
Clavulariidae_g16798
Clavulariidae_g16799PATCHED-RELATED
Clavulariidae_g168
Clavulariidae_g1680COILED-COIL DOMAIN-CONTAINING PROTEIN 87
Clavulariidae_g16800
Clavulariidae_g16801
Clavulariidae_g16802
Clavulariidae_g16803
Clavulariidae_g16804
Clavulariidae_g16805INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g16806
Clavulariidae_g16807
Clavulariidae_g16808ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16809
Clavulariidae_g1681THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
Clavulariidae_g16810ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16811L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g16812UNCHARACTERIZED
Clavulariidae_g16813
Clavulariidae_g16814OPSIN
Clavulariidae_g16815OPSIN
Clavulariidae_g16816REVERSE TRANSCRIPTASES
Clavulariidae_g16817
Clavulariidae_g16818HELIX LOOP HELIX PROTEIN 21-RELATED
Clavulariidae_g16819METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN
Clavulariidae_g1682TUBULIN POLYGLUTAMYLASE
Clavulariidae_g16820TIPA
Clavulariidae_g16821DIMETHYLADENOSINE TRANSFERASE
Clavulariidae_g16822PATCHED-RELATED
Clavulariidae_g16823ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g16824ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16825
Clavulariidae_g16826ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16827REVERSE TRANSCRIPTASES
Clavulariidae_g16828REVERSE TRANSCRIPTASES
Clavulariidae_g16829SPHINGOMYELIN PHOSPHODIESTERASE
Clavulariidae_g1683
Clavulariidae_g16830ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16831SPHINGOMYELIN PHOSPHODIESTERASE
Clavulariidae_g16832DNA POLYMERASE
Clavulariidae_g16833
Clavulariidae_g16834COLLAGEN ALPHA
Clavulariidae_g16835PROTEIN CBG26694
Clavulariidae_g16836SPHINGOMYELIN PHOSPHODIESTERASE
Clavulariidae_g16837EXPRESSED PROTEIN
Clavulariidae_g16838
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