Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g16794 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16795 | PATCHED-RELATED |
Clavulariidae_g16796 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
Clavulariidae_g16797 | |
Clavulariidae_g16798 | |
Clavulariidae_g16799 | PATCHED-RELATED |
Clavulariidae_g168 | |
Clavulariidae_g1680 | COILED-COIL DOMAIN-CONTAINING PROTEIN 87 |
Clavulariidae_g16800 | |
Clavulariidae_g16801 | |
Clavulariidae_g16802 | |
Clavulariidae_g16803 | |
Clavulariidae_g16804 | |
Clavulariidae_g16805 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g16806 | |
Clavulariidae_g16807 | |
Clavulariidae_g16808 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16809 | |
Clavulariidae_g1681 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
Clavulariidae_g16810 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16811 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g16812 | UNCHARACTERIZED |
Clavulariidae_g16813 | |
Clavulariidae_g16814 | OPSIN |
Clavulariidae_g16815 | OPSIN |
Clavulariidae_g16816 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16817 | |
Clavulariidae_g16818 | HELIX LOOP HELIX PROTEIN 21-RELATED |
Clavulariidae_g16819 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
Clavulariidae_g1682 | TUBULIN POLYGLUTAMYLASE |
Clavulariidae_g16820 | TIPA |
Clavulariidae_g16821 | DIMETHYLADENOSINE TRANSFERASE |
Clavulariidae_g16822 | PATCHED-RELATED |
Clavulariidae_g16823 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g16824 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16825 | |
Clavulariidae_g16826 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16827 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16828 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16829 | SPHINGOMYELIN PHOSPHODIESTERASE |
Clavulariidae_g1683 | |
Clavulariidae_g16830 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16831 | SPHINGOMYELIN PHOSPHODIESTERASE |
Clavulariidae_g16832 | DNA POLYMERASE |
Clavulariidae_g16833 | |
Clavulariidae_g16834 | COLLAGEN ALPHA |
Clavulariidae_g16835 | PROTEIN CBG26694 |
Clavulariidae_g16836 | SPHINGOMYELIN PHOSPHODIESTERASE |
Clavulariidae_g16837 | EXPRESSED PROTEIN |
Clavulariidae_g16838 |