Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g17784 | |
| Clavulariidae_g17785 | |
| Clavulariidae_g17786 | |
| Clavulariidae_g17787 | CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED |
| Clavulariidae_g17788 | GAMMA-SECRETASE-ACTIVATING PROTEIN |
| Clavulariidae_g17789 | |
| Clavulariidae_g1779 | |
| Clavulariidae_g17790 | |
| Clavulariidae_g17791 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g17792 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17793 | |
| Clavulariidae_g17794 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17795 | |
| Clavulariidae_g17796 | |
| Clavulariidae_g17797 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17798 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| Clavulariidae_g17799 | |
| Clavulariidae_g178 | OSJNBA0013A04.12 PROTEIN |
| Clavulariidae_g1780 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g17800 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| Clavulariidae_g17801 | HEAT SHOCK PROTEIN 70KDA |
| Clavulariidae_g17802 | RETROTRANSPOSON |
| Clavulariidae_g17803 | |
| Clavulariidae_g17804 | |
| Clavulariidae_g17805 | |
| Clavulariidae_g17806 | |
| Clavulariidae_g17807 | HSC70-INTERACTING PROTEIN |
| Clavulariidae_g17808 | UNCHARACTERIZED |
| Clavulariidae_g17809 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g1781 | |
| Clavulariidae_g17810 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g17811 | SUGAR KINASE |
| Clavulariidae_g17812 | |
| Clavulariidae_g17813 | NF-KAPPA B ACTIVATING PROTEIN |
| Clavulariidae_g17814 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17815 | DNA POLYMERASE TYPE-X FAMILY MEMBER |
| Clavulariidae_g17816 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17817 | PROTEASE M14 CARBOXYPEPTIDASE |
| Clavulariidae_g17818 | PRE-MRNA CLEAVAGE COMPLEX II |
| Clavulariidae_g17819 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| Clavulariidae_g1782 | - |
| Clavulariidae_g17820 | LIM DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17821 | UBIQUITIN-PROTEIN LIGASE E3C |
| Clavulariidae_g17822 | HSC70CB, ISOFORM G-RELATED |
| Clavulariidae_g17823 | PROTEIN MAELSTROM HOMOLOG |
| Clavulariidae_g17824 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED |
| Clavulariidae_g17825 | |
| Clavulariidae_g17826 | |
| Clavulariidae_g17827 | HOMEOBOX PROTEIN ARISTALESS |
| Clavulariidae_g17828 | HOMEO BOX HB9 LIKE A-RELATED |
