About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17919REVERSE TRANSCRIPTASES
Clavulariidae_g1792ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17920T4-TYPE LYSOZYME 1-RELATED
Clavulariidae_g17921LD33804P
Clavulariidae_g17922UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN
Clavulariidae_g17923DNA-DIRECTED RNA POLYMERASE
Clavulariidae_g17924CARBON CATABOLITE REPRESSOR PROTEIN 4
Clavulariidae_g17925SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Clavulariidae_g17926SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Clavulariidae_g17927REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17928
Clavulariidae_g17929
Clavulariidae_g1793PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17930
Clavulariidae_g17931
Clavulariidae_g17932SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Clavulariidae_g17933SNF2/RAD54 HELICASE FAMILY
Clavulariidae_g17934REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17935REGULATOR OF CHROMOSOME CONDENSATION
Clavulariidae_g17936FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17937
Clavulariidae_g17938PITUITARY HOMEOBOX HOMOLOG PTX1
Clavulariidae_g17939VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Clavulariidae_g1794THAP DOMAIN PROTEIN
Clavulariidae_g17940ALMS1-RELATED
Clavulariidae_g17941LD25575P
Clavulariidae_g17942TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g17943TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g17944TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g17945TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g17946ATAXIN-10
Clavulariidae_g17947REVERSE TRANSCRIPTASE
Clavulariidae_g17948ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17949REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1795
Clavulariidae_g17950FAS-ASSOCIATED PROTEIN
Clavulariidae_g17951TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED
Clavulariidae_g17952
Clavulariidae_g17953DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
Clavulariidae_g17954LATROPHILIN RECEPTOR-LIKE PROTEIN A
Clavulariidae_g17955ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17956RW1 PROTEIN HOMOLOG
Clavulariidae_g17957RETROTRANSPOSON
Clavulariidae_g17958
Clavulariidae_g17959ALPHA- 1,3 -FUCOSYLTRANSFERASE
Clavulariidae_g1796
Clavulariidae_g17960HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g17961
Clavulariidae_g17962
Clavulariidae_g17963
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