Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17919 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1792 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17920 | T4-TYPE LYSOZYME 1-RELATED |
Clavulariidae_g17921 | LD33804P |
Clavulariidae_g17922 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN |
Clavulariidae_g17923 | DNA-DIRECTED RNA POLYMERASE |
Clavulariidae_g17924 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
Clavulariidae_g17925 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |
Clavulariidae_g17926 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |
Clavulariidae_g17927 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17928 | |
Clavulariidae_g17929 | |
Clavulariidae_g1793 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17930 | |
Clavulariidae_g17931 | |
Clavulariidae_g17932 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |
Clavulariidae_g17933 | SNF2/RAD54 HELICASE FAMILY |
Clavulariidae_g17934 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17935 | REGULATOR OF CHROMOSOME CONDENSATION |
Clavulariidae_g17936 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17937 | |
Clavulariidae_g17938 | PITUITARY HOMEOBOX HOMOLOG PTX1 |
Clavulariidae_g17939 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
Clavulariidae_g1794 | THAP DOMAIN PROTEIN |
Clavulariidae_g17940 | ALMS1-RELATED |
Clavulariidae_g17941 | LD25575P |
Clavulariidae_g17942 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g17943 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g17944 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g17945 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g17946 | ATAXIN-10 |
Clavulariidae_g17947 | REVERSE TRANSCRIPTASE |
Clavulariidae_g17948 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17949 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1795 | |
Clavulariidae_g17950 | FAS-ASSOCIATED PROTEIN |
Clavulariidae_g17951 | TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED |
Clavulariidae_g17952 | |
Clavulariidae_g17953 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
Clavulariidae_g17954 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
Clavulariidae_g17955 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17956 | RW1 PROTEIN HOMOLOG |
Clavulariidae_g17957 | RETROTRANSPOSON |
Clavulariidae_g17958 | |
Clavulariidae_g17959 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
Clavulariidae_g1796 | |
Clavulariidae_g17960 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
Clavulariidae_g17961 | |
Clavulariidae_g17962 | |
Clavulariidae_g17963 |