About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18053COLLAGEN ALPHA
Clavulariidae_g18054REVERSE TRANSCRIPTASES
Clavulariidae_g18055
Clavulariidae_g18056SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g18057REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18058PROTEIN BARK BEETLE
Clavulariidae_g18059PROTEIN BARK BEETLE
Clavulariidae_g1806ATP-DEPENDENT DNA HELICASE
Clavulariidae_g18060SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18061REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18062
Clavulariidae_g18063PROTEIN CBG26694
Clavulariidae_g18064REVERSE TRANSCRIPTASE
Clavulariidae_g18065RAPSYN-RELATED
Clavulariidae_g18066ATP-DEPENDENT RNA HELICASE DBP3
Clavulariidae_g18067
Clavulariidae_g18068DDB1- AND CUL4-ASSOCIATED FACTOR 10
Clavulariidae_g18069DDB1- AND CUL4-ASSOCIATED FACTOR 10
Clavulariidae_g1807
Clavulariidae_g18070DNA POLYMERASE
Clavulariidae_g18071NUCLEOLAR RNA-ASSOCIATED PROTEIN
Clavulariidae_g18072AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Clavulariidae_g18073RIBOSOMAL PROTEIN S19P FAMILY MEMBER
Clavulariidae_g18074
Clavulariidae_g18075
Clavulariidae_g18076
Clavulariidae_g18077F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18078
Clavulariidae_g18079
Clavulariidae_g1808CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED
Clavulariidae_g18080PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Clavulariidae_g18081MEMBRALIN/KINETOCHORE PROTEIN NUF2
Clavulariidae_g18082F-BOX ONLY PROTEIN 22
Clavulariidae_g18083NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18084NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g18085NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18086S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
Clavulariidae_g18087NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18088NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18089SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g1809
Clavulariidae_g18090NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g18091NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18092NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18093NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
Clavulariidae_g18094NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18095S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
Clavulariidae_g18096NACHT, LRR AND CARD DOMAINS-CONTAINING
Clavulariidae_g18097S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
Clavulariidae_g18098ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1
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