About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18189
Clavulariidae_g1819
Clavulariidae_g18190THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g18191
Clavulariidae_g18192EXPRESSED PROTEIN
Clavulariidae_g18193ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18194-
Clavulariidae_g18195ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18196REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18197
Clavulariidae_g18198
Clavulariidae_g18199PROTEIN CBG23764
Clavulariidae_g182
Clavulariidae_g1820
Clavulariidae_g18200LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Clavulariidae_g18201LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Clavulariidae_g18202VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g18203TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18204
Clavulariidae_g18205
Clavulariidae_g18206REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18207PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18208RETROTRANSPOSON
Clavulariidae_g18209
Clavulariidae_g1821
Clavulariidae_g18210
Clavulariidae_g18211REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18212
Clavulariidae_g18213HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Clavulariidae_g18214HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Clavulariidae_g18215AMMONIUM TRANSPORTER
Clavulariidae_g18216
Clavulariidae_g18217THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g18218UNCHARACTERIZED
Clavulariidae_g18219UPF0705 PROTEIN C11ORF49
Clavulariidae_g1822-
Clavulariidae_g18220
Clavulariidae_g18221CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g18222INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18223
Clavulariidae_g18224ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18225REVERSE TRANSCRIPTASE
Clavulariidae_g18226RAPSYN-RELATED
Clavulariidae_g18227
Clavulariidae_g18228UNCHARACTERIZED
Clavulariidae_g18229
Clavulariidae_g1823
Clavulariidae_g18230
Clavulariidae_g18231ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g18232
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