Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g18323 | PROTEIN CBG26694 |
| Clavulariidae_g18324 | IRE1-RELATED |
| Clavulariidae_g18325 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18326 | |
| Clavulariidae_g18327 | |
| Clavulariidae_g18328 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g18329 | |
| Clavulariidae_g1833 | |
| Clavulariidae_g18330 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18331 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g18332 | RETROTRANSPOSON |
| Clavulariidae_g18333 | RETROTRANSPOSON |
| Clavulariidae_g18334 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18335 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g18336 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18337 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Clavulariidae_g18338 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g18339 | |
| Clavulariidae_g1834 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18340 | PROTEIN CBG23764 |
| Clavulariidae_g18341 | |
| Clavulariidae_g18342 | PROTEIN CBG23764 |
| Clavulariidae_g18343 | COLLAGEN ALPHA |
| Clavulariidae_g18344 | APPLE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18345 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g18346 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g18347 | PROTEIN CBG26694 |
| Clavulariidae_g18348 | PROTEIN CBG26694 |
| Clavulariidae_g18349 | PROTEIN CBG26694 |
| Clavulariidae_g1835 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Clavulariidae_g18350 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18351 | |
| Clavulariidae_g18352 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g18353 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g18354 | |
| Clavulariidae_g18355 | |
| Clavulariidae_g18356 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18357 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18358 | |
| Clavulariidae_g18359 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g1836 | |
| Clavulariidae_g18360 | ZGC:195170 |
| Clavulariidae_g18361 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18362 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g18363 | |
| Clavulariidae_g18364 | PROTEIN CBG10425 |
| Clavulariidae_g18365 | RETROTRANSPOSON |
| Clavulariidae_g18366 | PROTEIN CBG26694 |
| Clavulariidae_g18367 | PROTEIN CBG26694 |
| Clavulariidae_g18368 |
