About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18279ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1828AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Clavulariidae_g18280CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18281CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18282HEART DEVELOPMENT PROTEIN WITH EGF-LIKE DOMAINS 1
Clavulariidae_g18283
Clavulariidae_g18284
Clavulariidae_g18285
Clavulariidae_g18286
Clavulariidae_g18287
Clavulariidae_g18288
Clavulariidae_g18289ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1829
Clavulariidae_g18290
Clavulariidae_g18291RETROTRANSPOSON
Clavulariidae_g18292
Clavulariidae_g18293REVERSE TRANSCRIPTASES
Clavulariidae_g18294PROTEIN CBG26694
Clavulariidae_g18295ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18296
Clavulariidae_g18297HEART DEVELOPMENT PROTEIN WITH EGF-LIKE DOMAINS 1
Clavulariidae_g18298
Clavulariidae_g18299UNCHARACTERIZED
Clavulariidae_g183DNAJ HOMOLOG SUBFAMILY C MEMBER 9
Clavulariidae_g1830TYROSINE-PROTEIN KINASE
Clavulariidae_g18300
Clavulariidae_g18301
Clavulariidae_g18302SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18303DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g18304SI:CH211-266K2.1
Clavulariidae_g18305DNA POLYMERASE
Clavulariidae_g18306COLLAGEN ALPHA
Clavulariidae_g18307
Clavulariidae_g18308
Clavulariidae_g18309-
Clavulariidae_g1831
Clavulariidae_g18310REVERSE TRANSCRIPTASES
Clavulariidae_g18311
Clavulariidae_g18312HEART DEVELOPMENT PROTEIN WITH EGF-LIKE DOMAINS 1
Clavulariidae_g18313
Clavulariidae_g18314F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18315OXIDASE/PEROXIDASE
Clavulariidae_g18316FUKUTIN RELATED PROTEIN
Clavulariidae_g18317UNCHARACTERIZED
Clavulariidae_g18318REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18319
Clavulariidae_g1832OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Clavulariidae_g18320REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18321
Clavulariidae_g18322
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