About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18369DNA POLYMERASE
Clavulariidae_g1837NADPH OXIDASE
Clavulariidae_g18370
Clavulariidae_g18371
Clavulariidae_g18372INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18373
Clavulariidae_g18374COLLAGEN ALPHA
Clavulariidae_g18375
Clavulariidae_g18376PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18377PROTEIN CBG26694
Clavulariidae_g18378
Clavulariidae_g18379
Clavulariidae_g1838PROTEIN CBG26694
Clavulariidae_g18380SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g18381
Clavulariidae_g18382TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18383PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18384REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18385
Clavulariidae_g18386PROTEIN CBG26694
Clavulariidae_g18387PROTEIN CBG26694
Clavulariidae_g18388DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18389ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1839
Clavulariidae_g18390ZGC:195170
Clavulariidae_g18391SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18392REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18393ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18394EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g18395ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18396ALPHA- 1,3 -FUCOSYLTRANSFERASE
Clavulariidae_g18397ALPHA- 1,3 -FUCOSYLTRANSFERASE
Clavulariidae_g18398REVERSE TRANSCRIPTASES
Clavulariidae_g18399
Clavulariidae_g184LANC-LIKE PROTEIN
Clavulariidae_g1840NADPH OXIDASE
Clavulariidae_g18400KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Clavulariidae_g18401INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18402
Clavulariidae_g18403MOLTING PROTEIN MLT-4
Clavulariidae_g18404
Clavulariidae_g18405REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18406
Clavulariidae_g18407PROTEIN CBG23806
Clavulariidae_g18408ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18409ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g1841HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18410REVERSE TRANSCRIPTASES
Clavulariidae_g18411RETROTRANSPOSON
Clavulariidae_g18412COLLAGEN ALPHA
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