Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g18369 | DNA POLYMERASE |
Clavulariidae_g1837 | NADPH OXIDASE |
Clavulariidae_g18370 | |
Clavulariidae_g18371 | |
Clavulariidae_g18372 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g18373 | |
Clavulariidae_g18374 | COLLAGEN ALPHA |
Clavulariidae_g18375 | |
Clavulariidae_g18376 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18377 | PROTEIN CBG26694 |
Clavulariidae_g18378 | |
Clavulariidae_g18379 | |
Clavulariidae_g1838 | PROTEIN CBG26694 |
Clavulariidae_g18380 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g18381 | |
Clavulariidae_g18382 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g18383 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18384 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18385 | |
Clavulariidae_g18386 | PROTEIN CBG26694 |
Clavulariidae_g18387 | PROTEIN CBG26694 |
Clavulariidae_g18388 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18389 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1839 | |
Clavulariidae_g18390 | ZGC:195170 |
Clavulariidae_g18391 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g18392 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18393 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18394 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
Clavulariidae_g18395 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g18396 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
Clavulariidae_g18397 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
Clavulariidae_g18398 | REVERSE TRANSCRIPTASES |
Clavulariidae_g18399 | |
Clavulariidae_g184 | LANC-LIKE PROTEIN |
Clavulariidae_g1840 | NADPH OXIDASE |
Clavulariidae_g18400 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
Clavulariidae_g18401 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g18402 | |
Clavulariidae_g18403 | MOLTING PROTEIN MLT-4 |
Clavulariidae_g18404 | |
Clavulariidae_g18405 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18406 | |
Clavulariidae_g18407 | PROTEIN CBG23806 |
Clavulariidae_g18408 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18409 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g1841 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18410 | REVERSE TRANSCRIPTASES |
Clavulariidae_g18411 | RETROTRANSPOSON |
Clavulariidae_g18412 | COLLAGEN ALPHA |