Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g18503 | TRANSCRIPTION FACTOR COE FAMILY MEMBER |
Clavulariidae_g18504 | HMG DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g18505 | |
Clavulariidae_g18506 | UNCHARACTERIZED |
Clavulariidae_g18507 | |
Clavulariidae_g18508 | PROTEIN G1-LIKE2 |
Clavulariidae_g18509 | |
Clavulariidae_g1851 | RETROTRANSPOSON |
Clavulariidae_g18510 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g18511 | RETROTRANSPOSON |
Clavulariidae_g18512 | RETROTRANSPOSON |
Clavulariidae_g18513 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g18514 | |
Clavulariidae_g18515 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18516 | REVERSE TRANSCRIPTASES |
Clavulariidae_g18517 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18518 | RETROTRANSPOSON |
Clavulariidae_g18519 | |
Clavulariidae_g1852 | |
Clavulariidae_g18520 | |
Clavulariidae_g18521 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18522 | |
Clavulariidae_g18523 | HMG DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g18524 | |
Clavulariidae_g18525 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g18526 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18527 | REVERSE TRANSCRIPTASES |
Clavulariidae_g18528 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18529 | |
Clavulariidae_g1853 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
Clavulariidae_g18530 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18531 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18532 | PROTEIN CBG26694 |
Clavulariidae_g18533 | PROTEIN CBG26694 |
Clavulariidae_g18534 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18535 | |
Clavulariidae_g18536 | DNA-BINDING PROTEIN-RELATED-RELATED |
Clavulariidae_g18537 | COLLAGEN ALPHA |
Clavulariidae_g18538 | |
Clavulariidae_g18539 | RETROTRANSPOSON |
Clavulariidae_g1854 | EXPRESSED PROTEIN |
Clavulariidae_g18540 | |
Clavulariidae_g18541 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g18542 | RETROTRANSPOSON |
Clavulariidae_g18543 | RETROTRANSPOSON |
Clavulariidae_g18544 | RETROTRANSPOSON |
Clavulariidae_g18545 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18546 | |
Clavulariidae_g18547 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g18548 | PROTEIN B, PUTATIVE-RELATED-RELATED |