About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18503TRANSCRIPTION FACTOR COE FAMILY MEMBER
Clavulariidae_g18504HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g18505
Clavulariidae_g18506UNCHARACTERIZED
Clavulariidae_g18507
Clavulariidae_g18508PROTEIN G1-LIKE2
Clavulariidae_g18509
Clavulariidae_g1851RETROTRANSPOSON
Clavulariidae_g18510CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18511RETROTRANSPOSON
Clavulariidae_g18512RETROTRANSPOSON
Clavulariidae_g18513ATP-DEPENDENT DNA HELICASE
Clavulariidae_g18514
Clavulariidae_g18515REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18516REVERSE TRANSCRIPTASES
Clavulariidae_g18517DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18518RETROTRANSPOSON
Clavulariidae_g18519
Clavulariidae_g1852
Clavulariidae_g18520
Clavulariidae_g18521ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18522
Clavulariidae_g18523HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g18524
Clavulariidae_g18525L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g18526PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18527REVERSE TRANSCRIPTASES
Clavulariidae_g18528REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18529
Clavulariidae_g1853PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Clavulariidae_g18530DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18531REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18532PROTEIN CBG26694
Clavulariidae_g18533PROTEIN CBG26694
Clavulariidae_g18534DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18535
Clavulariidae_g18536DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g18537COLLAGEN ALPHA
Clavulariidae_g18538
Clavulariidae_g18539RETROTRANSPOSON
Clavulariidae_g1854EXPRESSED PROTEIN
Clavulariidae_g18540
Clavulariidae_g18541ATP-DEPENDENT DNA HELICASE
Clavulariidae_g18542RETROTRANSPOSON
Clavulariidae_g18543RETROTRANSPOSON
Clavulariidae_g18544RETROTRANSPOSON
Clavulariidae_g18545REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18546
Clavulariidae_g18547PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g18548PROTEIN B, PUTATIVE-RELATED-RELATED
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