About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18549ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1855
Clavulariidae_g18550RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18551REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18552
Clavulariidae_g18553PROTEIN CBG26694
Clavulariidae_g18554
Clavulariidae_g18555
Clavulariidae_g18556CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18557
Clavulariidae_g18558EXPRESSED PROTEIN
Clavulariidae_g18559
Clavulariidae_g1856
Clavulariidae_g18560
Clavulariidae_g18561FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g18562HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g18563
Clavulariidae_g18564
Clavulariidae_g18565F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18566BEN DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g18567PROTEIN CBG26694
Clavulariidae_g18568
Clavulariidae_g18569
Clavulariidae_g1857PROTEIN CBG26694
Clavulariidae_g18570
Clavulariidae_g18571
Clavulariidae_g18572
Clavulariidae_g18573
Clavulariidae_g18574
Clavulariidae_g18575
Clavulariidae_g18576
Clavulariidae_g18577VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g18578RETROTRANSPOSON
Clavulariidae_g18579
Clavulariidae_g1858PROTEIN CBG26694
Clavulariidae_g18580
Clavulariidae_g18581ENDONUCLEASE-RELATED
Clavulariidae_g18582
Clavulariidae_g18583
Clavulariidae_g18584
Clavulariidae_g18585REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18586REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18587
Clavulariidae_g18588REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18589
Clavulariidae_g1859THAP DOMAIN PROTEIN
Clavulariidae_g18590REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18591
Clavulariidae_g18592VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g18593RETROTRANSPOSON
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