About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18684ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18685TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g18686PROTEIN CBG26694
Clavulariidae_g18687ENDONUCLEASE-RELATED
Clavulariidae_g18688
Clavulariidae_g18689PROTEIN CBG23806
Clavulariidae_g1869PROTEIN CBG26694
Clavulariidae_g18690
Clavulariidae_g18691ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18692VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Clavulariidae_g18693-
Clavulariidae_g18694
Clavulariidae_g18695REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18696RETROTRANSPOSON
Clavulariidae_g18697EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
Clavulariidae_g18698PROTEIN CBG23764
Clavulariidae_g18699
Clavulariidae_g187G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1870PROTEIN CBG26694
Clavulariidae_g18700INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18701
Clavulariidae_g18702COLLAGEN ALPHA
Clavulariidae_g18703
Clavulariidae_g18704N4BP1-RELATED
Clavulariidae_g18705METAL TRANSPORTER CNNM
Clavulariidae_g18706GLUTAREDOXIN
Clavulariidae_g18707RAS-RELATED PROTEIN RAB
Clavulariidae_g18708
Clavulariidae_g18709DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1871
Clavulariidae_g18710TRANSPOSASE
Clavulariidae_g18711
Clavulariidae_g18712PROTEIN CBG26694
Clavulariidae_g18713RETROTRANSPOSON
Clavulariidae_g18714EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18715THAP DOMAIN PROTEIN
Clavulariidae_g18716PENTRAXIN
Clavulariidae_g18717GLUTAREDOXIN
Clavulariidae_g18718PROTEIN CBG17840
Clavulariidae_g18719PROTEIN CBG17840
Clavulariidae_g1872
Clavulariidae_g18720THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g18721RAS-RELATED PROTEIN RAB
Clavulariidae_g18722FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g18723
Clavulariidae_g18724
Clavulariidae_g18725COLLAGEN ALPHA
Clavulariidae_g18726
Clavulariidae_g18727
Clavulariidae_g18728
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