About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18774DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18775
Clavulariidae_g18776MRNA EXPORT FACTOR AND BUB3
Clavulariidae_g18777MRNA EXPORT FACTOR AND BUB3
Clavulariidae_g18778MRNA EXPORT FACTOR AND BUB3
Clavulariidae_g187792-5 OLIGOADENYLATE SYNTHETASE
Clavulariidae_g1878ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18780
Clavulariidae_g18781CALCIUM BINDING PROTEINS
Clavulariidae_g18782PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18783
Clavulariidae_g18784
Clavulariidae_g18785HEAT SHOCK PROTEIN 70KDA
Clavulariidae_g18786
Clavulariidae_g18787REVERSE TRANSCRIPTASE
Clavulariidae_g18788REVERSE TRANSCRIPTASE
Clavulariidae_g18789
Clavulariidae_g1879-
Clavulariidae_g18790
Clavulariidae_g18791ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18792
Clavulariidae_g18793
Clavulariidae_g18794ZGC:195170
Clavulariidae_g18795
Clavulariidae_g18796TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g18797REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18798TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g18799TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g188G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1880
Clavulariidae_g18800PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18801ARMADILLO REPEAT-CONTAINING PROTEIN 1
Clavulariidae_g18802
Clavulariidae_g18803
Clavulariidae_g18804ZGC:195170
Clavulariidae_g18805ZINC FINGER PROTEIN
Clavulariidae_g18806ZNF44 PROTEIN
Clavulariidae_g18807
Clavulariidae_g18808
Clavulariidae_g18809ZINC FINGER AND SCAN DOMAIN-CONTAINING
Clavulariidae_g1881TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18810ODD-SKIPPED - RELATED
Clavulariidae_g18811ZINC FINGER PROTEIN
Clavulariidae_g18812KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Clavulariidae_g18813ZINC FINGER PROTEIN ZIC AND GLI
Clavulariidae_g18814IP01015P-RELATED
Clavulariidae_g18815ZINC FINGER AND SCAN DOMAIN-CONTAINING
Clavulariidae_g18816
Clavulariidae_g18817ZINC FINGER PROTEIN ZIC AND GLI
Clavulariidae_g18818DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
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