Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g18774 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g18775 | |
Clavulariidae_g18776 | MRNA EXPORT FACTOR AND BUB3 |
Clavulariidae_g18777 | MRNA EXPORT FACTOR AND BUB3 |
Clavulariidae_g18778 | MRNA EXPORT FACTOR AND BUB3 |
Clavulariidae_g18779 | 2-5 OLIGOADENYLATE SYNTHETASE |
Clavulariidae_g1878 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g18780 | |
Clavulariidae_g18781 | CALCIUM BINDING PROTEINS |
Clavulariidae_g18782 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18783 | |
Clavulariidae_g18784 | |
Clavulariidae_g18785 | HEAT SHOCK PROTEIN 70KDA |
Clavulariidae_g18786 | |
Clavulariidae_g18787 | REVERSE TRANSCRIPTASE |
Clavulariidae_g18788 | REVERSE TRANSCRIPTASE |
Clavulariidae_g18789 | |
Clavulariidae_g1879 | - |
Clavulariidae_g18790 | |
Clavulariidae_g18791 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18792 | |
Clavulariidae_g18793 | |
Clavulariidae_g18794 | ZGC:195170 |
Clavulariidae_g18795 | |
Clavulariidae_g18796 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g18797 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18798 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g18799 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g188 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1880 | |
Clavulariidae_g18800 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18801 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
Clavulariidae_g18802 | |
Clavulariidae_g18803 | |
Clavulariidae_g18804 | ZGC:195170 |
Clavulariidae_g18805 | ZINC FINGER PROTEIN |
Clavulariidae_g18806 | ZNF44 PROTEIN |
Clavulariidae_g18807 | |
Clavulariidae_g18808 | |
Clavulariidae_g18809 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Clavulariidae_g1881 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g18810 | ODD-SKIPPED - RELATED |
Clavulariidae_g18811 | ZINC FINGER PROTEIN |
Clavulariidae_g18812 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
Clavulariidae_g18813 | ZINC FINGER PROTEIN ZIC AND GLI |
Clavulariidae_g18814 | IP01015P-RELATED |
Clavulariidae_g18815 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Clavulariidae_g18816 | |
Clavulariidae_g18817 | ZINC FINGER PROTEIN ZIC AND GLI |
Clavulariidae_g18818 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |