About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18729PROTEIN CBG23764
Clavulariidae_g1873COLLAGEN ALPHA
Clavulariidae_g18730
Clavulariidae_g18731UNCHARACTERIZED
Clavulariidae_g18732
Clavulariidae_g18733
Clavulariidae_g18734RETROTRANSPOSON
Clavulariidae_g18735HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g18736
Clavulariidae_g18737
Clavulariidae_g18738PROTEIN CBG26694
Clavulariidae_g18739
Clavulariidae_g1874
Clavulariidae_g18740PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18741PROTEIN CBG26694
Clavulariidae_g18742
Clavulariidae_g18743PROTEIN CBG23806
Clavulariidae_g18744
Clavulariidae_g18745IP13529P
Clavulariidae_g18746
Clavulariidae_g18747LETHAL 2 GIANT LARVAE PROTEIN
Clavulariidae_g18748
Clavulariidae_g18749
Clavulariidae_g1875
Clavulariidae_g18750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18751IP13529P
Clavulariidae_g18752
Clavulariidae_g18753COLLAGEN ALPHA
Clavulariidae_g18754INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18755PROTEIN CBG23764
Clavulariidae_g18756
Clavulariidae_g18757PROTEIN CBG26694
Clavulariidae_g18758REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18759
Clavulariidae_g1876FI21293P1
Clavulariidae_g18760SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g18761
Clavulariidae_g18762TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18763
Clavulariidae_g18764REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18765
Clavulariidae_g18766
Clavulariidae_g18767
Clavulariidae_g18768
Clavulariidae_g18769
Clavulariidae_g1877UNCHARACTERIZED
Clavulariidae_g18770RETROTRANSPOSON
Clavulariidae_g18771FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g18772
Clavulariidae_g18773
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