About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18639CENTROSOMAL PROTEIN OF 162 KDA
Clavulariidae_g1864TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g18640CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN
Clavulariidae_g18641BONUS, ISOFORM C-RELATED
Clavulariidae_g18642MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
Clavulariidae_g18643DYNEIN INTERMEDIATE CHAIN
Clavulariidae_g18644PROTEIN TFG
Clavulariidae_g18645RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
Clavulariidae_g18646
Clavulariidae_g18647FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18648COLLAGEN ALPHA
Clavulariidae_g18649SEC63 DOMAIN-CONTAINING
Clavulariidae_g1865PROTEIN CBG26694
Clavulariidae_g1865028S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL
Clavulariidae_g18651
Clavulariidae_g18652COILED-COIL DOMAIN-CONTAINING PROTEIN 81
Clavulariidae_g18653TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED
Clavulariidae_g18654DNA EXCISION REPAIR PROTEIN ERCC-8
Clavulariidae_g18655PROTEIN ARGININE N-METHYLTRANSFERASE
Clavulariidae_g18656PROTEIN C9ORF135
Clavulariidae_g18657ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1
Clavulariidae_g18658
Clavulariidae_g18659SCAVENGER RECEPTOR CLASS F
Clavulariidae_g1866PROTEIN CBG26694
Clavulariidae_g18660
Clavulariidae_g18661
Clavulariidae_g18662
Clavulariidae_g18663SPLICING FACTOR SF3A-RELATED
Clavulariidae_g18664NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
Clavulariidae_g18665MERLIN/MOESIN/EZRIN/RADIXIN
Clavulariidae_g18666
Clavulariidae_g18667COLLAGEN ALPHA
Clavulariidae_g18668DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g18669FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A
Clavulariidae_g1867PROTEIN CBG26694
Clavulariidae_g18670OSTEOPETROSIS ASSOCIATED TRANSMEMBRANE PROTEIN 1
Clavulariidae_g18671
Clavulariidae_g18672DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
Clavulariidae_g18673FER-1-LIKE
Clavulariidae_g18674RETROTRANSPOSON
Clavulariidae_g18675RETROTRANSPOSON
Clavulariidae_g18676DYSFERLIN-RELATED
Clavulariidae_g18677ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18678TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18679
Clavulariidae_g1868PROTEIN CBG26694
Clavulariidae_g18680REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18681PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18682REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18683ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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