Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g18594 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18595 | |
Clavulariidae_g18596 | |
Clavulariidae_g18597 | |
Clavulariidae_g18598 | PROTEIN CBG23806 |
Clavulariidae_g18599 | |
Clavulariidae_g186 | SPARTIN |
Clavulariidae_g1860 | |
Clavulariidae_g18600 | RETROTRANSPOSON |
Clavulariidae_g18601 | |
Clavulariidae_g18602 | RETROTRANSPOSON |
Clavulariidae_g18603 | RETROTRANSPOSON |
Clavulariidae_g18604 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18605 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g18606 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18607 | N-LYSINE METHYLTRANSFERASE KMT5A |
Clavulariidae_g18608 | PROTEIN CBG26694 |
Clavulariidae_g18609 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g1861 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18610 | PROTEIN CBG26694 |
Clavulariidae_g18611 | LETHAL 2 GIANT LARVAE PROTEIN |
Clavulariidae_g18612 | |
Clavulariidae_g18613 | |
Clavulariidae_g18614 | |
Clavulariidae_g18615 | LETHAL 2 GIANT LARVAE PROTEIN |
Clavulariidae_g18616 | |
Clavulariidae_g18617 | ZINC FINGER PROTEIN 294 |
Clavulariidae_g18618 | ANTHRAX TOXIN RECEPTOR |
Clavulariidae_g18619 | PROTEIN EVA-1 |
Clavulariidae_g1862 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18620 | RUNT RELATED |
Clavulariidae_g18621 | TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED |
Clavulariidae_g18622 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
Clavulariidae_g18623 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
Clavulariidae_g18624 | PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44 |
Clavulariidae_g18625 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
Clavulariidae_g18626 | MALIC ENZYME-RELATED |
Clavulariidae_g18627 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
Clavulariidae_g18628 | SUA5 |
Clavulariidae_g18629 | FUKUTIN RELATED PROTEIN |
Clavulariidae_g1863 | |
Clavulariidae_g18630 | GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING |
Clavulariidae_g18631 | BRIX DOMAIN CONTAINING PROTEIN |
Clavulariidae_g18632 | TAXILIN |
Clavulariidae_g18633 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 |
Clavulariidae_g18634 | PENTRAXIN |
Clavulariidae_g18635 | |
Clavulariidae_g18636 | KINETOCHORE PROTEIN NDC80 |
Clavulariidae_g18637 | |
Clavulariidae_g18638 | PROTEIN HINDERIN |