About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18594REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18595
Clavulariidae_g18596
Clavulariidae_g18597
Clavulariidae_g18598PROTEIN CBG23806
Clavulariidae_g18599
Clavulariidae_g186SPARTIN
Clavulariidae_g1860
Clavulariidae_g18600RETROTRANSPOSON
Clavulariidae_g18601
Clavulariidae_g18602RETROTRANSPOSON
Clavulariidae_g18603RETROTRANSPOSON
Clavulariidae_g18604PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18605L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g18606ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18607N-LYSINE METHYLTRANSFERASE KMT5A
Clavulariidae_g18608PROTEIN CBG26694
Clavulariidae_g18609ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1861REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18610PROTEIN CBG26694
Clavulariidae_g18611LETHAL 2 GIANT LARVAE PROTEIN
Clavulariidae_g18612
Clavulariidae_g18613
Clavulariidae_g18614
Clavulariidae_g18615LETHAL 2 GIANT LARVAE PROTEIN
Clavulariidae_g18616
Clavulariidae_g18617ZINC FINGER PROTEIN 294
Clavulariidae_g18618ANTHRAX TOXIN RECEPTOR
Clavulariidae_g18619PROTEIN EVA-1
Clavulariidae_g1862ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18620RUNT RELATED
Clavulariidae_g18621TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED
Clavulariidae_g18622DNAJ HOMOLOG SUBFAMILY C MEMBER
Clavulariidae_g186232-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED
Clavulariidae_g18624PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
Clavulariidae_g18625GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED
Clavulariidae_g18626MALIC ENZYME-RELATED
Clavulariidae_g18627SERINE/THREONINE-PROTEIN KINASE IAL-RELATED
Clavulariidae_g18628SUA5
Clavulariidae_g18629FUKUTIN RELATED PROTEIN
Clavulariidae_g1863
Clavulariidae_g18630GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING
Clavulariidae_g18631BRIX DOMAIN CONTAINING PROTEIN
Clavulariidae_g18632TAXILIN
Clavulariidae_g18633PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4
Clavulariidae_g18634PENTRAXIN
Clavulariidae_g18635
Clavulariidae_g18636KINETOCHORE PROTEIN NDC80
Clavulariidae_g18637
Clavulariidae_g18638PROTEIN HINDERIN
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