About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18413
Clavulariidae_g18414COLLAGEN ALPHA
Clavulariidae_g18415
Clavulariidae_g18416
Clavulariidae_g18417SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18418
Clavulariidae_g18419
Clavulariidae_g1842
Clavulariidae_g18420
Clavulariidae_g18421VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g18422IP13529P
Clavulariidae_g18423VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g18424-
Clavulariidae_g18425PROTEIN CBG26694
Clavulariidae_g18426REVERSE TRANSCRIPTASES
Clavulariidae_g18427
Clavulariidae_g18428FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g18429PROTEIN CBG23806
Clavulariidae_g1843
Clavulariidae_g18430REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18431
Clavulariidae_g18432
Clavulariidae_g18433
Clavulariidae_g18434THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g18435
Clavulariidae_g18436FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g18437PROTEIN CBG26694
Clavulariidae_g18438
Clavulariidae_g18439
Clavulariidae_g1844
Clavulariidae_g18440
Clavulariidae_g18441INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g18442
Clavulariidae_g18443THAP DOMAIN PROTEIN
Clavulariidae_g18444ATP-DEPENDENT DNA HELICASE
Clavulariidae_g18445
Clavulariidae_g18446PROTEIN CBG26694
Clavulariidae_g18447
Clavulariidae_g18448ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18449HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g1845
Clavulariidae_g18450MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED
Clavulariidae_g18451ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18452
Clavulariidae_g18453THAP DOMAIN PROTEIN
Clavulariidae_g18454
Clavulariidae_g18455ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18456PROTEIN CBG26694
Clavulariidae_g18457RETROTRANSPOSON
Clavulariidae_g18458RETROTRANSPOSON
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