About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18233PUTATIVE-RELATED
Clavulariidae_g18234ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g18235
Clavulariidae_g18236
Clavulariidae_g18237
Clavulariidae_g18238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18239C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1824
Clavulariidae_g18240
Clavulariidae_g18241DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18242SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18243DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18244
Clavulariidae_g18245
Clavulariidae_g18246TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g18247RETROTRANSPOSON
Clavulariidae_g18248ATP-DEPENDENT DNA HELICASE
Clavulariidae_g18249REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1825SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18250
Clavulariidae_g18251TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g18252IG-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18253ALCOHOL O-ACETYLTRANSFERASE 1-RELATED
Clavulariidae_g18254REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18255
Clavulariidae_g18256REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18257
Clavulariidae_g18258
Clavulariidae_g18259
Clavulariidae_g1826
Clavulariidae_g18260
Clavulariidae_g18261
Clavulariidae_g18262NEPHRIN
Clavulariidae_g18263ZGC:195170
Clavulariidae_g18264SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18265
Clavulariidae_g18266
Clavulariidae_g18267KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g18268SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18269PROTEIN CBG26694
Clavulariidae_g1827PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g18270PROTEIN CBG26694
Clavulariidae_g18271HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18272SI:CH211-196P9.1-RELATED
Clavulariidae_g18273DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18274RETROTRANSPOSON
Clavulariidae_g18275
Clavulariidae_g18276PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g18277
Clavulariidae_g18278-
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