About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18099TOL-PAL SYSTEM PROTEIN TOLA
Clavulariidae_g181REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1810PROTEIN CBG26694
Clavulariidae_g18100RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Clavulariidae_g18101
Clavulariidae_g18102TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g18103REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18104
Clavulariidae_g18105TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g18106
Clavulariidae_g18107INSULIN GENE ENHANCER PROTEIN
Clavulariidae_g18108
Clavulariidae_g18109INTELECTIN
Clavulariidae_g1811
Clavulariidae_g18110
Clavulariidae_g18111
Clavulariidae_g18112ADHESION G PROTEIN-COUPLED RECEPTOR G7
Clavulariidae_g18113LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g18114HOMER
Clavulariidae_g18115UNCHARACTERIZED
Clavulariidae_g18116
Clavulariidae_g18117INTELECTIN
Clavulariidae_g18118INTELECTIN
Clavulariidae_g18119GLUTATHIONE S-TRANSFERASE
Clavulariidae_g1812CYTOKINE RECEPTOR
Clavulariidae_g18120UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g18121SODIUM/POTASSIUM/CALCIUM EXCHANGER
Clavulariidae_g18122CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Clavulariidae_g18123CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g18124ANKYRIN REPEAT PROTEIN
Clavulariidae_g18125GLUCOSYLCERAMIDASE
Clavulariidae_g18126ACID CLUSTER PROTEIN 33
Clavulariidae_g18127AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT
Clavulariidae_g18128LD33804P
Clavulariidae_g18129DYNEIN INTERMEDIATE CHAIN
Clavulariidae_g1813EXPRESSED PROTEIN
Clavulariidae_g18130SERINE/THREONINE-PROTEIN KINASE
Clavulariidae_g18131SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1
Clavulariidae_g18132MITOCHONDRIAL RIBOSOMAL PROTEIN L37
Clavulariidae_g18133TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1
Clavulariidae_g18134RAN GTPASE-ACTIVATING PROTEIN 1
Clavulariidae_g18135SMR DOMAIN-CONTAINING PROTEIN YPL199C
Clavulariidae_g18136F20B24.22
Clavulariidae_g18137
Clavulariidae_g18138G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g18139TRANSCRIPTION INITIATION FACTOR IIB-RELATED
Clavulariidae_g1814HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g18140ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
Clavulariidae_g18141
Clavulariidae_g18142
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