About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18008AF4/FMR2 FAMILY MEMBER
Clavulariidae_g18009-
Clavulariidae_g1801ENDONUCLEASE-RELATED
Clavulariidae_g18010
Clavulariidae_g18011REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18012G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g18013ENDONUCLEASE-RELATED
Clavulariidae_g18014PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18015G PROTEIN-COUPLED RECEPTOR-RELATED
Clavulariidae_g18016UNCHARACTERIZED
Clavulariidae_g18017O-METHYLTRANSFERASE-RELATED
Clavulariidae_g18018REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18019PROTEIN SIDEKICK
Clavulariidae_g1802
Clavulariidae_g18020TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18021REVERSE TRANSCRIPTASES
Clavulariidae_g18022SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g18023REVERSE TRANSCRIPTASES
Clavulariidae_g18024
Clavulariidae_g18025REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18026REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18027SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g18028
Clavulariidae_g18029ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1803UNCHARACTERIZED
Clavulariidae_g18030
Clavulariidae_g18031
Clavulariidae_g18032CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18033
Clavulariidae_g18034
Clavulariidae_g18035CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18036L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g18037PROTEIN CBG26694
Clavulariidae_g18038
Clavulariidae_g18039REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1804
Clavulariidae_g18040DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18041ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18042REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18043GASTROKINE 1
Clavulariidae_g18044
Clavulariidae_g18045REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18046REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18047COLLAGEN ALPHA
Clavulariidae_g18048RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT
Clavulariidae_g18049ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1805
Clavulariidae_g18050REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18051
Clavulariidae_g18052PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
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