Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g18008 | AF4/FMR2 FAMILY MEMBER |
Clavulariidae_g18009 | - |
Clavulariidae_g1801 | ENDONUCLEASE-RELATED |
Clavulariidae_g18010 | |
Clavulariidae_g18011 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18012 | G PROTEIN-COUPLED RECEPTOR-RELATED |
Clavulariidae_g18013 | ENDONUCLEASE-RELATED |
Clavulariidae_g18014 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18015 | G PROTEIN-COUPLED RECEPTOR-RELATED |
Clavulariidae_g18016 | UNCHARACTERIZED |
Clavulariidae_g18017 | O-METHYLTRANSFERASE-RELATED |
Clavulariidae_g18018 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18019 | PROTEIN SIDEKICK |
Clavulariidae_g1802 | |
Clavulariidae_g18020 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g18021 | REVERSE TRANSCRIPTASES |
Clavulariidae_g18022 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g18023 | REVERSE TRANSCRIPTASES |
Clavulariidae_g18024 | |
Clavulariidae_g18025 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18026 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18027 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g18028 | |
Clavulariidae_g18029 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g1803 | UNCHARACTERIZED |
Clavulariidae_g18030 | |
Clavulariidae_g18031 | |
Clavulariidae_g18032 | CXC2 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18033 | |
Clavulariidae_g18034 | |
Clavulariidae_g18035 | CXC2 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18036 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g18037 | PROTEIN CBG26694 |
Clavulariidae_g18038 | |
Clavulariidae_g18039 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1804 | |
Clavulariidae_g18040 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g18041 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18042 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18043 | GASTROKINE 1 |
Clavulariidae_g18044 | |
Clavulariidae_g18045 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18046 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18047 | COLLAGEN ALPHA |
Clavulariidae_g18048 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT |
Clavulariidae_g18049 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1805 | |
Clavulariidae_g18050 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g18051 | |
Clavulariidae_g18052 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |