About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17874REVERSE TRANSCRIPTASES
Clavulariidae_g17875TRANSPOSASE
Clavulariidae_g17876ZGC:195170
Clavulariidae_g17877
Clavulariidae_g17878
Clavulariidae_g17879STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g1788
Clavulariidae_g17880RETROTRANSPOSON
Clavulariidae_g17881INTERLEUKIN-17 RECEPTOR
Clavulariidae_g17882CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Clavulariidae_g17883REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17884UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g17885
Clavulariidae_g17886
Clavulariidae_g17887
Clavulariidae_g17888
Clavulariidae_g17889RIBOPHORIN I
Clavulariidae_g1789THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g17890
Clavulariidae_g17891
Clavulariidae_g17892
Clavulariidae_g17893EXPRESSED PROTEIN
Clavulariidae_g17894
Clavulariidae_g17895MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Clavulariidae_g17896FIBROBLAST GROWTH FACTOR
Clavulariidae_g17897OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17898OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17899OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g179SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN
Clavulariidae_g1790PROTEIN CBG26694
Clavulariidae_g17900DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g17901
Clavulariidae_g17902OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17903
Clavulariidae_g17904RE74312P
Clavulariidae_g17905RAN GTPASE-ACTIVATING PROTEIN 1
Clavulariidae_g17906
Clavulariidae_g17907PHOX (PX) DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17908PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Clavulariidae_g17909EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
Clavulariidae_g1791ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g17910EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
Clavulariidae_g17911COLLAGEN ALPHA
Clavulariidae_g17912REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17913
Clavulariidae_g1791426S PROTEASOME REGULATORY SUBUNIT
Clavulariidae_g17915UNCHARACTERIZED
Clavulariidae_g17916ANGIOTENSIN-CONVERTING ENZYME
Clavulariidae_g17917PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35
Clavulariidae_g17918DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED
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