Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17874 | REVERSE TRANSCRIPTASES |
Clavulariidae_g17875 | TRANSPOSASE |
Clavulariidae_g17876 | ZGC:195170 |
Clavulariidae_g17877 | |
Clavulariidae_g17878 | |
Clavulariidae_g17879 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Clavulariidae_g1788 | |
Clavulariidae_g17880 | RETROTRANSPOSON |
Clavulariidae_g17881 | INTERLEUKIN-17 RECEPTOR |
Clavulariidae_g17882 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
Clavulariidae_g17883 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17884 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Clavulariidae_g17885 | |
Clavulariidae_g17886 | |
Clavulariidae_g17887 | |
Clavulariidae_g17888 | |
Clavulariidae_g17889 | RIBOPHORIN I |
Clavulariidae_g1789 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g17890 | |
Clavulariidae_g17891 | |
Clavulariidae_g17892 | |
Clavulariidae_g17893 | EXPRESSED PROTEIN |
Clavulariidae_g17894 | |
Clavulariidae_g17895 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Clavulariidae_g17896 | FIBROBLAST GROWTH FACTOR |
Clavulariidae_g17897 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17898 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17899 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g179 | SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN |
Clavulariidae_g1790 | PROTEIN CBG26694 |
Clavulariidae_g17900 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g17901 | |
Clavulariidae_g17902 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17903 | |
Clavulariidae_g17904 | RE74312P |
Clavulariidae_g17905 | RAN GTPASE-ACTIVATING PROTEIN 1 |
Clavulariidae_g17906 | |
Clavulariidae_g17907 | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17908 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
Clavulariidae_g17909 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
Clavulariidae_g1791 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g17910 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
Clavulariidae_g17911 | COLLAGEN ALPHA |
Clavulariidae_g17912 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17913 | |
Clavulariidae_g17914 | 26S PROTEASOME REGULATORY SUBUNIT |
Clavulariidae_g17915 | UNCHARACTERIZED |
Clavulariidae_g17916 | ANGIOTENSIN-CONVERTING ENZYME |
Clavulariidae_g17917 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 35 |
Clavulariidae_g17918 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |