About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17603
Clavulariidae_g17604HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g17605TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g17606TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g17607L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g17608OS02G0202900 PROTEIN
Clavulariidae_g17609TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g1761ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17610ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17611TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g17612
Clavulariidae_g17613GLUTATHIONE S-TRANSFERASE KAPPA
Clavulariidae_g17614TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB
Clavulariidae_g17615OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17616CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g17617BONUS, ISOFORM C-RELATED
Clavulariidae_g17618LD33804P
Clavulariidae_g17619LD33804P
Clavulariidae_g1762
Clavulariidae_g17620LD33804P
Clavulariidae_g17621GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN
Clavulariidae_g17622MACOILIN
Clavulariidae_g17623MACOILIN
Clavulariidae_g17624AMINOTRANSFERASE CLASS V
Clavulariidae_g17625
Clavulariidae_g17626
Clavulariidae_g17627
Clavulariidae_g17628PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4
Clavulariidae_g17629
Clavulariidae_g1763
Clavulariidae_g17630EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER
Clavulariidae_g17631GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1
Clavulariidae_g17632MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO
Clavulariidae_g17633
Clavulariidae_g17634TETRASPANIN
Clavulariidae_g17635E3 UBIQUITIN-PROTEIN LIGASE KCMF1
Clavulariidae_g17636SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Clavulariidae_g17637CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8
Clavulariidae_g17638VASCULAR CELL ADHESION MOLECULE 1
Clavulariidae_g17639
Clavulariidae_g1764
Clavulariidae_g17640NEPHRIN
Clavulariidae_g17641CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8
Clavulariidae_g17642PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Clavulariidae_g17643INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g17644INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g17645RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17646RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17647ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17648TNF RECEPTOR ASSOCIATED FACTOR
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