Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17603 | |
Clavulariidae_g17604 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g17605 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g17606 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g17607 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g17608 | OS02G0202900 PROTEIN |
Clavulariidae_g17609 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g1761 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17610 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17611 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g17612 | |
Clavulariidae_g17613 | GLUTATHIONE S-TRANSFERASE KAPPA |
Clavulariidae_g17614 | TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB |
Clavulariidae_g17615 | OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17616 | CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1 |
Clavulariidae_g17617 | BONUS, ISOFORM C-RELATED |
Clavulariidae_g17618 | LD33804P |
Clavulariidae_g17619 | LD33804P |
Clavulariidae_g1762 | |
Clavulariidae_g17620 | LD33804P |
Clavulariidae_g17621 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
Clavulariidae_g17622 | MACOILIN |
Clavulariidae_g17623 | MACOILIN |
Clavulariidae_g17624 | AMINOTRANSFERASE CLASS V |
Clavulariidae_g17625 | |
Clavulariidae_g17626 | |
Clavulariidae_g17627 | |
Clavulariidae_g17628 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 |
Clavulariidae_g17629 | |
Clavulariidae_g1763 | |
Clavulariidae_g17630 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER |
Clavulariidae_g17631 | GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1 |
Clavulariidae_g17632 | MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO |
Clavulariidae_g17633 | |
Clavulariidae_g17634 | TETRASPANIN |
Clavulariidae_g17635 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
Clavulariidae_g17636 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
Clavulariidae_g17637 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
Clavulariidae_g17638 | VASCULAR CELL ADHESION MOLECULE 1 |
Clavulariidae_g17639 | |
Clavulariidae_g1764 | |
Clavulariidae_g17640 | NEPHRIN |
Clavulariidae_g17641 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
Clavulariidae_g17642 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
Clavulariidae_g17643 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
Clavulariidae_g17644 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
Clavulariidae_g17645 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17646 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17647 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17648 | TNF RECEPTOR ASSOCIATED FACTOR |