Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g17829 | FI24210P1 |
| Clavulariidae_g1783 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g17830 | PREFOLDIN SUBUNIT 2 |
| Clavulariidae_g17831 | |
| Clavulariidae_g17832 | |
| Clavulariidae_g17833 | PROLINE AND SERINE-RICH PROTEIN 3 |
| Clavulariidae_g17834 | CAMK FAMILY PROTEIN KINASE |
| Clavulariidae_g17835 | |
| Clavulariidae_g17836 | |
| Clavulariidae_g17837 | EIF4G DOMAIN PROTEIN |
| Clavulariidae_g17838 | |
| Clavulariidae_g17839 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1784 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17840 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Clavulariidae_g17841 | TRANSLATION FACTOR GUF1-RELATED |
| Clavulariidae_g17842 | BICD FAMILY-LIKE CARGO ADAPTER |
| Clavulariidae_g17843 | PROTEIN CBG26694 |
| Clavulariidae_g17844 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
| Clavulariidae_g17845 | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 |
| Clavulariidae_g17846 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Clavulariidae_g17847 | PIRNA BIOGENESIS PROTEIN EXD1 |
| Clavulariidae_g17848 | |
| Clavulariidae_g17849 | |
| Clavulariidae_g1785 | PROTEIN CBG26694 |
| Clavulariidae_g17850 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 |
| Clavulariidae_g17851 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17852 | UNCHARACTERIZED |
| Clavulariidae_g17853 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g17854 | |
| Clavulariidae_g17855 | EXPRESSED PROTEIN |
| Clavulariidae_g17856 | |
| Clavulariidae_g17857 | |
| Clavulariidae_g17858 | PROTEIN CBG23764 |
| Clavulariidae_g17859 | COLLAGEN ALPHA |
| Clavulariidae_g1786 | |
| Clavulariidae_g17860 | |
| Clavulariidae_g17861 | UNCHARACTERIZED |
| Clavulariidae_g17862 | UNCHARACTERIZED |
| Clavulariidae_g17863 | |
| Clavulariidae_g17864 | |
| Clavulariidae_g17865 | RIBONUCLEASE |
| Clavulariidae_g17866 | |
| Clavulariidae_g17867 | |
| Clavulariidae_g17868 | PROTEIN CBG26694 |
| Clavulariidae_g17869 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g1787 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g17870 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g17871 | COLLAGEN ALPHA |
| Clavulariidae_g17872 | DYNEIN HEAVY CHAIN |
| Clavulariidae_g17873 | MULTICOPPER OXIDASE-RELATED |
