About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18143
Clavulariidae_g18144DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN
Clavulariidae_g181455-HYDROXYTRYPTAMINE RECEPTOR
Clavulariidae_g18146PHOSPHATIDYLINOSITOL GLYCAN
Clavulariidae_g18147OXIDOREDUCTASE HTATIP2
Clavulariidae_g18148
Clavulariidae_g18149
Clavulariidae_g1815ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18150
Clavulariidae_g18151
Clavulariidae_g18152M7GPPPN-MRNA HYDROLASE
Clavulariidae_g18153
Clavulariidae_g18154
Clavulariidae_g18155REVERSE TRANSCRIPTASES
Clavulariidae_g18156TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18157
Clavulariidae_g18158TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g18159TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g1816ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Clavulariidae_g18160
Clavulariidae_g18161THAP DOMAIN PROTEIN
Clavulariidae_g18162REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18163TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18164ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g18165REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18166TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g18167ENDONUCLEASE-RELATED
Clavulariidae_g18168
Clavulariidae_g18169COLLAGEN ALPHA
Clavulariidae_g1817
Clavulariidae_g18170
Clavulariidae_g18171TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g18172ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18173THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g18174
Clavulariidae_g18175PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18176REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18177
Clavulariidae_g18178RETROTRANSPOSON
Clavulariidae_g18179THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g1818DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18180THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g18181ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18182MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g18183REVERSE TRANSCRIPTASES
Clavulariidae_g18184
Clavulariidae_g18185DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18186
Clavulariidae_g18187ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18188
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