About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g18864POL PROTEIN
Clavulariidae_g18865SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g18866
Clavulariidae_g18867
Clavulariidae_g18868REVERSE TRANSCRIPTASES
Clavulariidae_g18869TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1887KYNURENINE 3-MONOOXYGENASE
Clavulariidae_g18870COLLAGEN ALPHA
Clavulariidae_g18871
Clavulariidae_g18872PENTRAXIN
Clavulariidae_g18873ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18874PENTRAXIN
Clavulariidae_g18875ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18876PROTEIN CBG26694
Clavulariidae_g18877REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18878PROTEIN CBG26694
Clavulariidae_g18879PROTEIN CBG26694
Clavulariidae_g1888TYROSINE-PROTEIN PHOSPHATASE
Clavulariidae_g18880SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18881
Clavulariidae_g18882UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g18883
Clavulariidae_g18884ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18885EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
Clavulariidae_g18886
Clavulariidae_g18887ZGC:195170
Clavulariidae_g18888REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18889TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1889PROTEASE M1 ZINC METALLOPROTEASE
Clavulariidae_g18890STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
Clavulariidae_g18891RETROTRANSPOSON
Clavulariidae_g18892REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18893ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18894
Clavulariidae_g18895
Clavulariidae_g18896PROTEIN CBG26694
Clavulariidae_g18897REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18898REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18899
Clavulariidae_g189
Clavulariidae_g1890PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE
Clavulariidae_g18900RETROTRANSPOSON
Clavulariidae_g18901RETROTRANSPOSON
Clavulariidae_g18902EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18903THAP DOMAIN PROTEIN
Clavulariidae_g18904COLLAGEN ALPHA
Clavulariidae_g18905
Clavulariidae_g18906
Clavulariidae_g18907ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18908PROTEIN CBG26694
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