About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g1895452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g18955RETROTRANSPOSON
Clavulariidae_g18956PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18957
Clavulariidae_g18958ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18959ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1896
Clavulariidae_g18960
Clavulariidae_g18961
Clavulariidae_g18962ATP-DEPENDENT DNA HELICASE
Clavulariidae_g18963DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18964
Clavulariidae_g18965
Clavulariidae_g18966
Clavulariidae_g18967INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18968CHROMOBOX PROTEIN
Clavulariidae_g18969PROTEIN CBG23806
Clavulariidae_g1897MULTICOPPER OXIDASE-RELATED
Clavulariidae_g18970
Clavulariidae_g18971REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18972
Clavulariidae_g18973EXPRESSED PROTEIN
Clavulariidae_g18974
Clavulariidae_g18975
Clavulariidae_g18976
Clavulariidae_g18977
Clavulariidae_g18978
Clavulariidae_g1897940S RIBOSOMAL PROTEIN S10
Clavulariidae_g1898PROTEIN DR1
Clavulariidae_g18980REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18981REVERSE TRANSCRIPTASES
Clavulariidae_g18982
Clavulariidae_g18983DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g18984ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18985ENDONUCLEASE RELATED
Clavulariidae_g18986-
Clavulariidae_g18987CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18988PROTEIN CBG26694
Clavulariidae_g18989
Clavulariidae_g1899LUNG SEVEN TRANSMEMBRANE RECEPTOR
Clavulariidae_g18990REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g18991PROTEIN CBG26694
Clavulariidae_g18992
Clavulariidae_g18993PROTEIN CBG26694
Clavulariidae_g18994-
Clavulariidae_g18995
Clavulariidae_g18996ENDONUCLEASE-RELATED
Clavulariidae_g18997PROTEIN CBG26694
Clavulariidae_g18998ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g18999PROTEIN CBG26694
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