About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19089OVOCHYMASE-RELATED
Clavulariidae_g1909BETA-1,4-GALACTOSYLTRANSFERASE
Clavulariidae_g19090BONUS, ISOFORM C-RELATED
Clavulariidae_g19091DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g19092
Clavulariidae_g19093TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g19094
Clavulariidae_g19095GPI TRANSAMIDASE COMPONENT PIG-T-RELATED
Clavulariidae_g19096PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19097RETROTRANSPOSON
Clavulariidae_g19098PROTEASE M14 CARBOXYPEPTIDASE
Clavulariidae_g19099RNA-BINDING PROTEIN NOB1
Clavulariidae_g191CHAPERONIN
Clavulariidae_g1910GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
Clavulariidae_g19100BONUS, ISOFORM C-RELATED
Clavulariidae_g19101ENDONUCLEASE-RELATED
Clavulariidae_g19102SH3 MULTIPLE DOMAIN
Clavulariidae_g19103SULFATE TRANSPORTER
Clavulariidae_g19104SULFATE TRANSPORTER
Clavulariidae_g19105ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g19106ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g19107ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g19108ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19109ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g1911TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g19110DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g19111ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g19112C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
Clavulariidae_g19113ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19114ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19115
Clavulariidae_g19116
Clavulariidae_g19117ATP-DEPENDENT DNA HELICASE
Clavulariidae_g19118INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19119ZGC:195170
Clavulariidae_g1912FORKHEAD BOX PROTEIN
Clavulariidae_g19120ZGC:195170
Clavulariidae_g19121SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g19122DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g19123THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g19124
Clavulariidae_g19125
Clavulariidae_g19126DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Clavulariidae_g19127UNCHARACTERIZED
Clavulariidae_g19128TRANSCRIPTION FACTOR E2F
Clavulariidae_g19129NUCLEAR PORE COMPLEX PROTEIN NUP205
Clavulariidae_g1913PROBABLE MEMBRANE PROTEIN DUF221-RELATED
Clavulariidae_g19130
Clavulariidae_g19131RETROTRANSPOSON
Clavulariidae_g19132SIMILAR TO RIKEN CDNA E130308A19
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