Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g19133 | SERINE/THREONINE-PROTEIN KINASE |
| Clavulariidae_g19134 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| Clavulariidae_g19135 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g19136 | |
| Clavulariidae_g19137 | |
| Clavulariidae_g19138 | TRANSPOSASE |
| Clavulariidae_g19139 | |
| Clavulariidae_g1914 | UNCHARACTERIZED |
| Clavulariidae_g19140 | RETROTRANSPOSON |
| Clavulariidae_g19141 | RETROTRANSPOSON |
| Clavulariidae_g19142 | RETROTRANSPOSON |
| Clavulariidae_g19143 | |
| Clavulariidae_g19144 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g19145 | PROTEIN CBG26694 |
| Clavulariidae_g19146 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19147 | |
| Clavulariidae_g19148 | FLAP ENDONUCLEASE FAMILY MEMBER |
| Clavulariidae_g19149 | |
| Clavulariidae_g1915 | GLYCOPROTEIN HORMONE RECEPTOR |
| Clavulariidae_g19150 | |
| Clavulariidae_g19151 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19152 | |
| Clavulariidae_g19153 | |
| Clavulariidae_g19154 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19155 | RING FINGER PROTEIN 127 |
| Clavulariidae_g19156 | |
| Clavulariidae_g19157 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g19158 | FIBRILLIN-RELATED |
| Clavulariidae_g19159 | |
| Clavulariidae_g1916 | BTB POZ DOMAIN CONTAINING 7 |
| Clavulariidae_g19160 | |
| Clavulariidae_g19161 | |
| Clavulariidae_g19162 | PHOSPHOLIPASE D |
| Clavulariidae_g19163 | SPHINGOMYELINASE FAMILY MEMBER |
| Clavulariidae_g19164 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g19165 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Clavulariidae_g19166 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19167 | LYSOSOMAL ACID LIPASE-RELATED |
| Clavulariidae_g19168 | RETROTRANSPOSON |
| Clavulariidae_g19169 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g1917 | PROTEIN PHOSPHATASE 2C |
| Clavulariidae_g19170 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g19171 | REVERSE TRANSCRIPTASE |
| Clavulariidae_g19172 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Clavulariidae_g19173 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19174 | - |
| Clavulariidae_g19175 | |
| Clavulariidae_g19176 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g19177 | ZGC:195170 |
| Clavulariidae_g19178 |
