Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g19269 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g1927 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| Clavulariidae_g19270 | UNCHARACTERIZED |
| Clavulariidae_g19271 | |
| Clavulariidae_g19272 | |
| Clavulariidae_g19273 | |
| Clavulariidae_g19274 | |
| Clavulariidae_g19275 | |
| Clavulariidae_g19276 | RAS-LIKE FAMILY MEMBER 11 |
| Clavulariidae_g19277 | |
| Clavulariidae_g19278 | |
| Clavulariidae_g19279 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1928 | MULTICOPPER OXIDASE-RELATED |
| Clavulariidae_g19280 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g19281 | |
| Clavulariidae_g19282 | SI:CH211-196P9.1-RELATED |
| Clavulariidae_g19283 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19284 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19285 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19286 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19287 | |
| Clavulariidae_g19288 | - |
| Clavulariidae_g19289 | |
| Clavulariidae_g1929 | DUMPY: SHORTER THAN WILD-TYPE |
| Clavulariidae_g19290 | EXPRESSED PROTEIN |
| Clavulariidae_g19291 | |
| Clavulariidae_g19292 | |
| Clavulariidae_g19293 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19294 | |
| Clavulariidae_g19295 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19296 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19297 | TRANSPOSASE-RELATED |
| Clavulariidae_g19298 | |
| Clavulariidae_g19299 | |
| Clavulariidae_g193 | NEUROTRANSMITTER GATED ION CHANNEL |
| Clavulariidae_g1930 | OVARIAN CARCINOMA ANTIGEN CA125-RELATED |
| Clavulariidae_g19300 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g19301 | |
| Clavulariidae_g19302 | RETROTRANSPOSON |
| Clavulariidae_g19303 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19304 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19305 | REVERSE TRANSCRIPTASE |
| Clavulariidae_g19306 | |
| Clavulariidae_g19307 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| Clavulariidae_g19308 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g19309 | PROTEIN CBG26694 |
| Clavulariidae_g1931 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| Clavulariidae_g19310 | CELL WALL INTEGRITY/STRESS RESPONSE COMPONENT-LIKE PROTEIN |
| Clavulariidae_g19311 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g19312 | ATP-DEPENDENT DNA HELICASE |
