About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19313
Clavulariidae_g19314TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g19315
Clavulariidae_g19316
Clavulariidae_g19317
Clavulariidae_g19318REVERSE TRANSCRIPTASES
Clavulariidae_g19319TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1932EF-HAND DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19320ZGC:195170
Clavulariidae_g19321SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g19322
Clavulariidae_g19323SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g19324
Clavulariidae_g19325PROTEIN CBG26694
Clavulariidae_g19326
Clavulariidae_g19327
Clavulariidae_g19328
Clavulariidae_g19329ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g1933
Clavulariidae_g19330
Clavulariidae_g19331INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19332EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g19333
Clavulariidae_g19334
Clavulariidae_g19335
Clavulariidae_g19336ATP-DEPENDENT DNA HELICASE
Clavulariidae_g19337
Clavulariidae_g19338
Clavulariidae_g19339
Clavulariidae_g1934EF-HAND DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19340OS04G0629600 PROTEIN
Clavulariidae_g19341
Clavulariidae_g19342ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19343-
Clavulariidae_g19344
Clavulariidae_g19345IP13529P
Clavulariidae_g19346ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19347REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19348
Clavulariidae_g19349
Clavulariidae_g1935HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
Clavulariidae_g19350
Clavulariidae_g19351PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19352KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g19353PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19354OS03G0264950 PROTEIN-RELATED
Clavulariidae_g19355OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g19356ATP-DEPENDENT DNA HELICASE
Clavulariidae_g19357
Clavulariidae_g19358RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
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