About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g19179
Clavulariidae_g1918-
Clavulariidae_g19180ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19181
Clavulariidae_g19182RAPSYN-RELATED
Clavulariidae_g19183TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g19184UNCHARACTERIZED
Clavulariidae_g19185TRIHELIX TRANSCRIPTION FACTOR ASIL2
Clavulariidae_g19186REVERSE TRANSCRIPTASES
Clavulariidae_g19187REVERSE TRANSCRIPTASES
Clavulariidae_g19188RETROTRANSPOSON
Clavulariidae_g19189RETROTRANSPOSON
Clavulariidae_g1919-
Clavulariidae_g19190RETROTRANSPOSON
Clavulariidae_g19191KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g19192
Clavulariidae_g19193RETROTRANSPOSON
Clavulariidae_g19194
Clavulariidae_g19195PROTEIN CBG10425
Clavulariidae_g19196
Clavulariidae_g19197
Clavulariidae_g19198
Clavulariidae_g19199
Clavulariidae_g192
Clavulariidae_g1920PROLYL-TRNA SYNTHETASE
Clavulariidae_g19200REVERSE TRANSCRIPTASES
Clavulariidae_g19201EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19202THAP DOMAIN PROTEIN
Clavulariidae_g19203PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19204SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g19205REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19206FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g19207PROTEIN CBG23806
Clavulariidae_g19208
Clavulariidae_g19209PROTEIN CBG26694
Clavulariidae_g1921
Clavulariidae_g19210PROTEIN CBG26694
Clavulariidae_g19211
Clavulariidae_g19212APOLIPOPROTEIN L
Clavulariidae_g19213
Clavulariidae_g19214
Clavulariidae_g19215
Clavulariidae_g19216TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g19217TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g19218REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19219SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1922SECRETED MODULAR CALCIUM-BINDING PROTEIN
Clavulariidae_g19220REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g19221PROTEIN CBG26694
Clavulariidae_g19222SRCR DOMAIN-CONTAINING PROTEIN
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